Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr10g0115 | ATGATGGAGAAGCACAAGTGCAAGCTTTGCTTCAGAAGCTTTTCCAATGGCAGGGCCTTGGGGGGTCACATGCGGTCTCACATGATGAACCTTACTCTCGCAAAGCCCGAAGAAGAGTCATCGCGAACCGTTCAACTCAGTTTCGAAGCTGAATCAGCCTCTTCTTCATCATCATCTGAAGACGAACAAGGTAATAACGATGATGACAAGGGTCTTTGCTACGGCCTCAGAGAGAACCCAAAGAGAAGCATTCGCCTCGTGGATCCAGAATTCTCTTTCGCAGCCGCAGACACTGGTTGTGTCATTCTTCAAGACAGAGAGAGTGAAACTGAATCATCCAAGAATAACCCAACTCGTAGAAGATCCAAAAGGGCATGGAAACTCGGCGTGTTCGATTCAAAGTACCACCATCATCATCATAACAAGAAGCAAGGGGGTGACGTGGAACATGAAGCCATTCTGAAGAAGAAGGTAAAGTTTTGCAAAGATAGTAAGACATCGTGGGTGGACCACGAACCTGCCAGTTCGGTTTCTGATGCAACCACCGAGGAAGATGTCGCGGTTTGTCTCATGATGCTGTCTAGGGACAAATGGAAGAGACAAAAAGATCAATTAATGGAAGATCAATTTGAAGAAGAGGAAGAGGAAGAAGAGGAGGATGATGACGAAGAAGAAGAAGATGACGACGAGAGATCCTTAGAAGAGAGTGATGAATCTCAAGAGATGATGAAACTGTGCAAGAACCGGGTACAAGGTAGGTATAAATGTGAGACCTGTAACAAGGTGTTTCGATCATATCAAGCGTTAGGGGGTCACAGAGCGAGTCACAAAAAGATCAAAGTGAACTTATCTGTGGATGATGATGAAGCAGAAGTTGAACGTGGCAAAAAGGGTGGAACTTGTGCTGTGGAAAAGAAAATACACGAGTGCCCCGTTTGTTTCAGAGTCTTTGCTTCGGGTCAAGCACTGGGTGGACACAAGAGAACCCATGTTACTGGCTCAGCAAATACCACTGTTCTTCCAATTTCCACCAAGCTTGGAAACAGCTTCATAGATCTCAACCTCCCAGCTCCAATCGATGATGATGATGCTAGCCAATTCGAGAACTCTGCGGTTTCAGATGCCGAATTTGTCAAAACCCGTTAA | 1146 | 0.4564 | MMEKHKCKLCFRSFSNGRALGGHMRSHMMNLTLAKPEEESSRTVQLSFEAESASSSSSSEDEQGNNDDDKGLCYGLRENPKRSIRLVDPEFSFAAADTGCVILQDRESETESSKNNPTRRRSKRAWKLGVFDSKYHHHHHNKKQGGDVEHEAILKKKVKFCKDSKTSWVDHEPASSVSDATTEEDVAVCLMMLSRDKWKRQKDQLMEDQFEEEEEEEEEDDDEEEEDDDERSLEESDESQEMMKLCKNRVQGRYKCETCNKVFRSYQALGGHRASHKKIKVNLSVDDDEAEVERGKKGGTCAVEKKIHECPVCFRVFASGQALGGHKRTHVTGSANTTVLPISTKLGNSFIDLNLPAPIDDDDASQFENSAVSDAEFVKTR* | 382 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr10g0115 | 381 | SMART | c2h2final6 | 308 | 330 | IPR013087 | - | |
Apr10g0115 | 381 | SMART | c2h2final6 | 254 | 276 | IPR013087 | - | |
Apr10g0115 | 381 | SMART | c2h2final6 | 5 | 27 | IPR013087 | - | |
Apr10g0115 | 381 | Gene3D | Classic Zinc Finger | 251 | 330 | - | - | |
Apr10g0115 | 381 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 2 | 379 | IPR044303 | GO:0006355 | |
Apr10g0115 | 381 | MobiDBLite | consensus disorder prediction | 35 | 74 | - | - | |
Apr10g0115 | 381 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 308 | 335 | IPR013087 | - | |
Apr10g0115 | 381 | Coils | Coil | 195 | 227 | - | - | |
Apr10g0115 | 381 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 256 | 276 | IPR013087 | - | |
Apr10g0115 | 381 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 5 | 27 | IPR013087 | - | |
Apr10g0115 | 381 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 254 | 281 | IPR013087 | - | |
Apr10g0115 | 381 | SUPERFAMILY | beta-beta-alpha zinc fingers | 253 | 330 | IPR036236 | - | |
Apr10g0115 | 381 | PANTHER | CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR | 2 | 379 | - | - | |
Apr10g0115 | 381 | MobiDBLite | consensus disorder prediction | 204 | 242 | - | - | |
Apr10g0115 | 381 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 310 | 330 | IPR013087 | - | |
Apr10g0115 | 381 | Pfam | C2H2-type zinc finger | 308 | 330 | - | - | |
Apr10g0115 | 381 | Pfam | C2H2-type zinc finger | 253 | 278 | - | - | |
Apr10g0115 | 381 | Pfam | C2H2-type zinc finger | 5 | 28 | - | - | |
Apr10g0115 | 381 | MobiDBLite | consensus disorder prediction | 208 | 236 | - | - | |
Apr10g0115 | 381 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 7 | 27 | IPR013087 | - | |
Apr10g0115 | 381 | MobiDBLite | consensus disorder prediction | 36 | 61 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr10g0115 | Apr-Chr10 | 2954605 | 2955769 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr10g0115 | 2 | 365 | C2H2 Transcription Factor Family | AT3G60580 | 41.667 | 1.31e-69 | 219 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Apr10g0115 | zf-C2H2_6 | 4.1e-12 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr10g0115 | - | - | vra:106780254 | 510.375 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Apr10g0115 | 10 | 2954605 | 2955769 | Apr10g0115 | 10 | 2954605 | 2955769 | ECH |