Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0115 ATGATGGAGAAGCACAAGTGCAAGCTTTGCTTCAGAAGCTTTTCCAATGGCAGGGCCTTGGGGGGTCACATGCGGTCTCACATGATGAACCTTACTCTCGCAAAGCCCGAAGAAGAGTCATCGCGAACCGTTCAACTCAGTTTCGAAGCTGAATCAGCCTCTTCTTCATCATCATCTGAAGACGAACAAGGTAATAACGATGATGACAAGGGTCTTTGCTACGGCCTCAGAGAGAACCCAAAGAGAAGCATTCGCCTCGTGGATCCAGAATTCTCTTTCGCAGCCGCAGACACTGGTTGTGTCATTCTTCAAGACAGAGAGAGTGAAACTGAATCATCCAAGAATAACCCAACTCGTAGAAGATCCAAAAGGGCATGGAAACTCGGCGTGTTCGATTCAAAGTACCACCATCATCATCATAACAAGAAGCAAGGGGGTGACGTGGAACATGAAGCCATTCTGAAGAAGAAGGTAAAGTTTTGCAAAGATAGTAAGACATCGTGGGTGGACCACGAACCTGCCAGTTCGGTTTCTGATGCAACCACCGAGGAAGATGTCGCGGTTTGTCTCATGATGCTGTCTAGGGACAAATGGAAGAGACAAAAAGATCAATTAATGGAAGATCAATTTGAAGAAGAGGAAGAGGAAGAAGAGGAGGATGATGACGAAGAAGAAGAAGATGACGACGAGAGATCCTTAGAAGAGAGTGATGAATCTCAAGAGATGATGAAACTGTGCAAGAACCGGGTACAAGGTAGGTATAAATGTGAGACCTGTAACAAGGTGTTTCGATCATATCAAGCGTTAGGGGGTCACAGAGCGAGTCACAAAAAGATCAAAGTGAACTTATCTGTGGATGATGATGAAGCAGAAGTTGAACGTGGCAAAAAGGGTGGAACTTGTGCTGTGGAAAAGAAAATACACGAGTGCCCCGTTTGTTTCAGAGTCTTTGCTTCGGGTCAAGCACTGGGTGGACACAAGAGAACCCATGTTACTGGCTCAGCAAATACCACTGTTCTTCCAATTTCCACCAAGCTTGGAAACAGCTTCATAGATCTCAACCTCCCAGCTCCAATCGATGATGATGATGCTAGCCAATTCGAGAACTCTGCGGTTTCAGATGCCGAATTTGTCAAAACCCGTTAA 1146 0.4564 MMEKHKCKLCFRSFSNGRALGGHMRSHMMNLTLAKPEEESSRTVQLSFEAESASSSSSSEDEQGNNDDDKGLCYGLRENPKRSIRLVDPEFSFAAADTGCVILQDRESETESSKNNPTRRRSKRAWKLGVFDSKYHHHHHNKKQGGDVEHEAILKKKVKFCKDSKTSWVDHEPASSVSDATTEEDVAVCLMMLSRDKWKRQKDQLMEDQFEEEEEEEEEDDDEEEEDDDERSLEESDESQEMMKLCKNRVQGRYKCETCNKVFRSYQALGGHRASHKKIKVNLSVDDDEAEVERGKKGGTCAVEKKIHECPVCFRVFASGQALGGHKRTHVTGSANTTVLPISTKLGNSFIDLNLPAPIDDDDASQFENSAVSDAEFVKTR* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0115 381 SMART c2h2final6 308 330 IPR013087 -
Apr10g0115 381 SMART c2h2final6 254 276 IPR013087 -
Apr10g0115 381 SMART c2h2final6 5 27 IPR013087 -
Apr10g0115 381 Gene3D Classic Zinc Finger 251 330 - -
Apr10g0115 381 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 2 379 IPR044303 GO:0006355
Apr10g0115 381 MobiDBLite consensus disorder prediction 35 74 - -
Apr10g0115 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 308 335 IPR013087 -
Apr10g0115 381 Coils Coil 195 227 - -
Apr10g0115 381 ProSitePatterns Zinc finger C2H2 type domain signature. 256 276 IPR013087 -
Apr10g0115 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 27 IPR013087 -
Apr10g0115 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 281 IPR013087 -
Apr10g0115 381 SUPERFAMILY beta-beta-alpha zinc fingers 253 330 IPR036236 -
Apr10g0115 381 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 2 379 - -
Apr10g0115 381 MobiDBLite consensus disorder prediction 204 242 - -
Apr10g0115 381 ProSitePatterns Zinc finger C2H2 type domain signature. 310 330 IPR013087 -
Apr10g0115 381 Pfam C2H2-type zinc finger 308 330 - -
Apr10g0115 381 Pfam C2H2-type zinc finger 253 278 - -
Apr10g0115 381 Pfam C2H2-type zinc finger 5 28 - -
Apr10g0115 381 MobiDBLite consensus disorder prediction 208 236 - -
Apr10g0115 381 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Apr10g0115 381 MobiDBLite consensus disorder prediction 36 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0115 Apr-Chr10 2954605 2955769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0115 2 365 C2H2 Transcription Factor Family AT3G60580 41.667 1.31e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr10g0115 zf-C2H2_6 4.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0115 - - vra:106780254 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0115 10 2954605 2955769 Apr10g0115 10 2954605 2955769 ECH