Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0107 ATGAGCCAGTGTGTTCCCAGCTGGGATGTCGACGACAACCCACCACCCCCAAGAGTTTCTCTTCGTTCCAACTCCAATTCAACTGCCCCTGATGTCCCCATGTTAGACTACGATGTTGCTGAACTTACATGGGAAAATGGACAGCTATCTATGCATGGCTTAGGGTTACCGCGAGTGCCGTTGAAACCATCCACGACGACCAATAATAAGTACACCTGGGAAAAGCCTCGTGCAAGTGGCACCTTAGAATCCATAGTGAACCAAGCCACTAGCTTACCCGAGAGGGGTAAAGATGGTAGCGCCGCCGGTGCTAACACCGAAGGGGGTTACGGGAATTTGTTAGTCCCATGGTTCGACCCTCGCCGCGCAACAGCAGCCGCCGCCGCCGCGTCCAACAATACCATGACTATGGACGCATTGGTGCCCTGCTCGAACCGTTCGGAGGAGCAGAGCAACCATGCCATGGACTCCAACCCCAGAGGGGTTGGAACGTGCATGGTGGATTGCTCCACACGTGTGGGGTCGTGCTGTGGTAACCATGGGGAAGGCGCGGTCCTTGCTGCCGCGAAGCGCGCCAAGGTTGCACACGTGCCGGTGGGTGGGCACGAGATGAGTGGGAGGGATCAGAGTGTGAGTGGCAGTGCCACCTTTGGGAGGGATAGTAAGCACGTGACGCTTGACACGTGTGACAGGGAATTTGACATGGGTTTCACTTCCACTTCCATTGGGTCGCTCGAAAACACCAGTTCCGCTAAGCAGTGCACCAAGACCACCACTGTTGACGAACACGATTCTGTTTCCCATAGCAAGCCCAGGGAAGATGGGGATGAAGAAAAGAAAAAGAAAGGAAATGAAAAATCTTCGGTTTCCACTAAAAGGAGTAGAGCCGCAGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACAGATAAAGCTTCAATGTTGGATGAGGTGATAGAATATCTGAAACAGTTGCAAGCACAAGTGCAGATGATGAATAGAATCAACATGTCATCCATGATACTGCCATTGACCATGCAACAACAGCTTCAAATGTCAATGATGTCTCCAATGGGGATAGGGATGGGGATGGGGATGGGGATGGGAATGGGGATGGATATGAACTCCCTGAATCGTGCAAACATCCCTGGCATCCCTCCCGTCCTCCACCCTTCTGCCTTCATGCCTATGCCTGCATGGGATGCCGCCGCCGGCGACCGACTTCAAGGGACTCCGGCCACTGTGATGCCTGACCCTTTGTCCACTTTTTTTGGATGCCAATCACAGCCAATGACGATGGATGCCTACAGTAGGATTGCTGCAATGTATCAGCAGCTGCACCAACCTCACGGTTCTGGTTCTAAGAATTGA 1428 0.5196 MSQCVPSWDVDDNPPPPRVSLRSNSNSTAPDVPMLDYDVAELTWENGQLSMHGLGLPRVPLKPSTTTNNKYTWEKPRASGTLESIVNQATSLPERGKDGSAAGANTEGGYGNLLVPWFDPRRATAAAAAASNNTMTMDALVPCSNRSEEQSNHAMDSNPRGVGTCMVDCSTRVGSCCGNHGEGAVLAAAKRAKVAHVPVGGHEMSGRDQSVSGSATFGRDSKHVTLDTCDREFDMGFTSTSIGSLENTSSAKQCTKTTTVDEHDSVSHSKPREDGDEEKKKKGNEKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMILPLTMQQQLQMSMMSPMGIGMGMGMGMGMGMDMNSLNRANIPGIPPVLHPSAFMPMPAWDAAAGDRLQGTPATVMPDPLSTFFGCQSQPMTMDAYSRIAAMYQQLHQPHGSGSKN* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0107 475 MobiDBLite consensus disorder prediction 298 312 - -
Apr10g0107 475 MobiDBLite consensus disorder prediction 240 312 - -
Apr10g0107 475 Gene3D - 290 356 IPR036638 GO:0046983
Apr10g0107 475 SMART finulus 301 350 IPR011598 GO:0046983
Apr10g0107 475 MobiDBLite consensus disorder prediction 200 220 - -
Apr10g0107 475 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 293 356 IPR036638 GO:0046983
Apr10g0107 475 Pfam Helix-loop-helix DNA-binding domain 300 345 IPR011598 GO:0046983
Apr10g0107 475 MobiDBLite consensus disorder prediction 257 289 - -
Apr10g0107 475 Coils Coil 301 321 - -
Apr10g0107 475 MobiDBLite consensus disorder prediction 1 32 - -
Apr10g0107 475 MobiDBLite consensus disorder prediction 240 256 - -
Apr10g0107 475 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 474 IPR031066 -
Apr10g0107 475 CDD bHLH_AtPIF_like 295 356 - -
Apr10g0107 475 PANTHER TRANSCRIPTION FACTOR UNE10 1 474 - -
Apr10g0107 475 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 295 344 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0107 Apr-Chr10 2785273 2791113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0107 1 456 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 50.323 1.87e-108 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr10g0107 HLH 7.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0107 - - gmx:100798775 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0107 10 2785273 2791113 Apr10g0107 10 2785273 2791113 ECH