Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0098 ATGTTGGACTACGAATGGGGAAACCCATCAACGATAATACTCGCCGGAAATGAAGGCGCCGCCGCCACAGACACCGACCAAACTCACCGGCAAATCTTCGACCACAACTACACCTCTCTATCTAACCCCTTTCTTCATGGTTCTACACTAACCGCCACTCCTTTCTCCCATCACCATCACTTCAACCCCCCACAACCGCACCAGCATCAGCATCACCCCTTCTTCGACCCACGCGCCTTCTCAGGCGCGTCAGCCACTTCCTTTTCACCATCACCTTCCATGCTCTCACTTAACCCAATCCCACCCATCTCCGCCTCCCACTGCGGGCTGGGGCCTGGTTCTGGGCTTGGGCTTCTACTCATGCCCAAGTCCGAAGATTTCACTCCGCCCGTGGACTTCCAGGCTTCTGGGCTTGGGCTTAACCTGGGAGGCCGTACTTACTTTGCCTCTTGCAATGACGACATCGTCAACCGGCTCTGCCGGCGTGCCAAGACGGTAGAATCGGTTCCAACGATGCTGTCGAACTTACCCCGCTGTCAAGCACAAGGATGCAATGCGGACCTTTCTGATGCGAAGCACTATCACCGCCGTCACAAGGTATGCGAGTTTCACTCCAAAGCCGCCACCGTCGTCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGATTCCATCTACTTTCAGAATTTGACAATGGTAAACGGAGCTGCAGGAAGAGACTTGCAGATCATAATCGTCGTCGAAGAAAAATACAGCAACCAACTCAAGAAATCCAGAAATCTCAGCCTCCTTTGGACAATATTGCAAGGTCCTCATCAGAGTCTGGGATTCAATCTTCATCGTCAGTGAAGGTTGGTTTGTCACCGCCAGATTATTTCCGGCGAAGTCCATACCAAAATAGAGGCTCTTCAACATCATCATCAGGGTCATTGCTTTTCTCTAGCGGTTAG 957 0.5266 MLDYEWGNPSTIILAGNEGAAATDTDQTHRQIFDHNYTSLSNPFLHGSTLTATPFSHHHHFNPPQPHQHQHHPFFDPRAFSGASATSFSPSPSMLSLNPIPPISASHCGLGPGSGLGLLLMPKSEDFTPPVDFQASGLGLNLGGRTYFASCNDDIVNRLCRRAKTVESVPTMLSNLPRCQAQGCNADLSDAKHYHRRHKVCEFHSKAATVVAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKIQQPTQEIQKSQPPLDNIARSSSESGIQSSSSVKVGLSPPDYFRRSPYQNRGSSTSSSGSLLFSSG* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0098 318 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 94 293 - -
Apr10g0098 318 MobiDBLite consensus disorder prediction 257 288 - -
Apr10g0098 318 SUPERFAMILY SBT domain 177 256 IPR036893 GO:0003677|GO:0005634
Apr10g0098 318 Gene3D - 174 240 IPR036893 GO:0003677|GO:0005634
Apr10g0098 318 MobiDBLite consensus disorder prediction 299 318 - -
Apr10g0098 318 ProSiteProfiles Zinc finger SBP-type profile. 176 253 IPR004333 GO:0003677
Apr10g0098 318 MobiDBLite consensus disorder prediction 245 318 - -
Apr10g0098 318 Pfam SBP domain 179 252 IPR004333 GO:0003677
Apr10g0098 318 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 94 293 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0098 Apr-Chr10 2480896 2484246 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0098 1 226 SBP-box Gene Family AT1G02065 41.797 1.94e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr10g0098 SBP 4.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0098 - - gmx:100778566 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0098 10 2480896 2484246 Apr10g0098 10 2480896 2484246 ECH