Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0097 ATGGAGTTTGAAGGGAACATGTTCTGTCTTGGCAACAGAGACCAAAATGGAAACAGTAACAGTAACAGTTTTGCTTGGGGTACATGGGAAACAACCACCCCCACTACTGCTGCTAATAATAACAACAATAGTAATAACGGTTCCAGGTTAGTCAACGCTTTTAACAACACCGTCGTTGGCGGCGTCACGGCGGCGGAGAGTTCTGTCCCCGCGAACCGTCACGACTCCGCTGGACTAGCCAACGCGCTCATGTTTCTCCCCCGAAACGACGGTGTTCTGCGTCAGCGCCAGCAGCAGAATCCGTACGTGGGAGATGGGTCGCACGTGCACCCGGACCCGCATCTCATGTGCTTGAAGCTTGGGAAGAGGCATTACTTTGAGGACGCCAGTGGGAGTGGTAGTGGCGGCGGCGGAGGTGGTGGTGGAGGATTGGTGTTGGGGGATAAGAGAGGGAAAGGGTATTCCGGCGGCGGTGGTGGGGTGAAGACGGTGGGGTTCACGGCGGCTACAGTGCCGAGGTGTCAGGTGGAGGGATGCCACGTGGCGCTGCTGAATGCGAAGGACTACCACCGGAGGCACAAGGTTTGTGAGATGCATTCCAAGGCTCCCAAAGTTGTGGTGTTAGGGATGGAGCAGAGGTTCTGTCAGCAGTGTAGCAGGTTTCATGTCGTATCGGAGTTTGACGATTCTAAGAGAAGTTGTAGGAGGAGACTGGCAGGTCACAATGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTGCAAGGAATTCTTCACAAGGAGGGTGTGCTCTCTCTCTTCTGTCATCTAGGAGTGATTCTTGGCTTTCTCCTGCTGATCTCTCCATAAGATGCAGTGCTGCATTGCGCGAATTGATAGCTGAAAACCGAGCAGCCATCATGGCCAGGCAGTTTGTTTCAGACAGGGAGTGGCATTTACACCACCATGCAGTGGAAGACTTCAAGGAGATCCAACCTGAATCCAATTATTTCCCTCAACAGATGTTTCCCCAGACACAGTAA 1020 0.5275 MEFEGNMFCLGNRDQNGNSNSNSFAWGTWETTTPTTAANNNNNSNNGSRLVNAFNNTVVGGVTAAESSVPANRHDSAGLANALMFLPRNDGVLRQRQQQNPYVGDGSHVHPDPHLMCLKLGKRHYFEDASGSGSGGGGGGGGGLVLGDKRGKGYSGGGGGVKTVGFTAATVPRCQVEGCHVALLNAKDYHRRHKVCEMHSKAPKVVVLGMEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSSQGGCALSLLSSRSDSWLSPADLSIRCSAALRELIAENRAAIMARQFVSDREWHLHHHAVEDFKEIQPESNYFPQQMFPQTQ* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0097 339 Gene3D - 166 235 IPR036893 GO:0003677|GO:0005634
Apr10g0097 339 Pfam SBP domain 174 247 IPR004333 GO:0003677
Apr10g0097 339 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 51 339 - -
Apr10g0097 339 MobiDBLite consensus disorder prediction 238 259 - -
Apr10g0097 339 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677
Apr10g0097 339 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 51 339 IPR044817 GO:0003677
Apr10g0097 339 SUPERFAMILY SBT domain 172 253 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0097 Apr-Chr10 2320295 2325531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0097 116 247 SBP-box Gene Family AT1G27370 50.758 5.37e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr10g0097 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0097 - - gmx:100806582 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0097 10 2320295 2325531 Apr10g0097 10 2320295 2325531 ECH