Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0091 ATGAATTTGAGCTACGAACAGAGGCTTCAGGTTGTTGCAAAAATCATACTCGACAGCGACGCACGCTCTGGCGACGCGCCGCCATGTCAGGAAGAGTTTGGGCTCACGGCAACGCTCAAGCCCCACCAGGTGGAAGGGTTGGCGTGGCTCATACGGAGGTACAAACTCGGCGTCAACGTTGTCCTCGGGGATGAGATGGGACTGGGCAAGACTTTGCAAGCTATCTCCTTTTTAAGCTATTTAAAAGCATGCCAGTTGTCACTCGGACCATTTTTGGTTATATGTCCTTTAAGTGTGACAGATTGTTGGGAGTCAGAGATAGTCAAATTTACCCCTAAACTAGCAGTATTCAAATATGTTGGCGATAAAGAATACAGGCGCAATCTACGCATGAAAATGCATGAACATGTAATGCAGCAGTCTTCAACAGTCCTGTTGTCTTTTGATGTGCTGTTAACTACATATGACATTGCACTGATGGATCAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATTGATGAAGCTCAAAGACTGAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCGGTATATAATGCCAAGACGGTTGTTGATGACTGGCACGCCCATTCAAAACAACCTTTCTGAATTGTGGGCGTTGATGTATTTTTGCATGCCTTCTGTCTTTGGTACACTGGATCAGTTCCTTTCTACATTTAAGGACATCAGTAATCATGCATCAGTTCTTGATGCTCCAATGGTAAAGGAGCAACTTAAAATTCTAAGAAATGTACTGGGAGCCTTTATGCTTCGACGTACCAAATCAAAGCTTATGGACTCTGGAAATTTAGTTCTGCCTCCTCTCACTGAGACAACTGTGTTAGTACCCCTTGTCAGCCTGCAGAAAAAGGTTTACAGGTCAATATTGAGGAAGGAACTTCCTAAGTTACTTGCACTTTCTTCTGGAACTTCAAATCATCAATCACTACAGAATATTGTGTTACAGCTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCTGGTATTGAGCCTGAACCTTATGAAGAAGGTGAACATCTAGTTCAGGCTAGTGGTAAACTGCTGATTTTGGACCAACTTCTTGAGAAGCTTCATTATTCTGGACATCGTGTCCTCCTTTTTGCTCAGATGACTCATACACTTGACATTTTGCAGGATTTTCTGGAGTTGCGGAAGTATTCTTATGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCTATAAGAAGTTTTAGTAGCCCATTAGCTAATATGGGCTTGAATTCTGAAGCTAACCAAAATGGAGCTTTTGTTTTTATGATCTCCACAAGAGCTGGGGGAGTTGGTTTGAATCTTGTGGCTGCTGATACTGTTATATTCTTCGAGCAAGATTGGAACCCTCAGGTTGACAAGCAAGCTTTACAAAGAGCACATAGAATCGGCCAGATGAACCATGTATTGTGTATAAACCTTGTTACAGAATGTACAGTGGAGGAAGTAATTATGCGGAGGGGAGAGAGAAAATTGCGGCTGAGCCTCAATGTTACAGGTGATAATATTCTGAAACATGAAGATAAGGAACAATCTGAAGCCGGAACTGGTGATTTGAAATCCATCATATTTGGGTTACATTTATTTGGTCCCGCTGAGATCAATGAGGGAAAATGTACGGACATGGACTTTCGAGAAATTAATGCTATGGCTGACAAGGTGATAGCTATGCGTGATGAACAAATATTTGACAAGGATGAAAGGAAATTTGAGGTCAATCCAAGAAGCATTCTAAAAGGATATGATGTTAAGGAAGGAGATTCTGCTTCTCTCTCTTGTGATCTTGGTCTTGATGAGGCTTCATATCTTTCTTGGGTTAAAAAGTTTGAGCAAGTGTCTAAATCAAATTGTGATTCAACCATGGACTTGAAGGGCAGAAGAAACTTAGATGAGGAAAGGAGTCTAAAACTTGAGTCTGCAAGGAAGAAGGCAGAGACAAAGCTGTCTAAGTGGAAAGCACTTGGATACCAGTCATTATCTGTAGAAGATCCTATAAGCCCACCAGATGGTGATATTACATCAGCTACTGGGTCTGTTCATTTTGTGTATGGAGATTGTACAGCTCCATCAAATGTTTGTTCATCTGAACCTGCTATAATATTCAGCTGCCTTGACACCTCTGGACATTGGGGCCATGGTGGAATGTTTGATGCACTGGCCAAACTTTCTTCGACCATTGGTGATGCATATGAAAGGGCTTCTGAACATGGGGATCTGCATCTTGGTGATCTGCATCTTATAAAGCTCGATGTTGTTGATGGATGTGATGAACAAAATATGGAAGGAAATGCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAATCTTATAATCCAAGGCGCAAAGTCCCTCGCAGTGAAATCTCACTTCCCCACTTGGAAAGCTGCTTATCAAAGGCCGCGTTCTCAGCTGCTCAAAATTCTGCATCAATACACATGCCGCGAATTGGTTATCAAGAGGGATCTGATCGTTCCGAGTGGTATACGATAGAACGGCTACTGAGAAAATATGCTTCCATTTATAACATCAATATATATGTATATTATTATCGAAGAGCACATTAA 2637 0.4164 MNLSYEQRLQVVAKIILDSDARSGDAPPCQEEFGLTATLKPHQVEGLAWLIRRYKLGVNVVLGDEMGLGKTLQAISFLSYLKACQLSLGPFLVICPLSVTDCWESEIVKFTPKLAVFKYVGDKEYRRNLRMKMHEHVMQQSSTVLLSFDVLLTTYDIALMDQDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISNHASVLDAPMVKEQLKILRNVLGAFMLRRTKSKLMDSGNLVLPPLTETTVLVPLVSLQKKVYRSILRKELPKLLALSSGTSNHQSLQNIVLQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLEKLHYSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSSPLANMGLNSEANQNGAFVFMISTRAGGVGLNLVAADTVIFFEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTECTVEEVIMRRGERKLRLSLNVTGDNILKHEDKEQSEAGTGDLKSIIFGLHLFGPAEINEGKCTDMDFREINAMADKVIAMRDEQIFDKDERKFEVNPRSILKGYDVKEGDSASLSCDLGLDEASYLSWVKKFEQVSKSNCDSTMDLKGRRNLDEERSLKLESARKKAETKLSKWKALGYQSLSVEDPISPPDGDITSATGSVHFVYGDCTAPSNVCSSEPAIIFSCLDTSGHWGHGGMFDALAKLSSTIGDAYERASEHGDLHLGDLHLIKLDVVDGCDEQNMEGNAPKMVALAVVQSYNPRRKVPRSEISLPHLESCLSKAAFSAAQNSASIHMPRIGYQEGSDRSEWYTIERLLRKYASIYNINIYVYYYRRAH* 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0091 878 Pfam SNF2-related domain 57 344 IPR000330 GO:0005524|GO:0140658
Apr10g0091 878 SUPERFAMILY Macro domain-like 704 873 IPR043472 -
Apr10g0091 878 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 226 IPR014001 -
Apr10g0091 878 SMART ultradead3 35 234 IPR014001 -
Apr10g0091 878 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 3 873 - -
Apr10g0091 878 Gene3D Leucine Aminopeptidase, subunit E, domain 1 703 878 IPR043472 -
Apr10g0091 878 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 536 IPR001650 -
Apr10g0091 878 SMART helicmild6 394 489 IPR001650 -
Apr10g0091 878 CDD Macro_Poa1p-like_SNF2 703 863 - -
Apr10g0091 878 CDD SF2_C_SNF 357 500 - -
Apr10g0091 878 Gene3D - 15 283 IPR038718 -
Apr10g0091 878 Gene3D - 284 595 IPR027417 -
Apr10g0091 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 271 IPR027417 -
Apr10g0091 878 Pfam Helicase conserved C-terminal domain 365 489 IPR001650 -
Apr10g0091 878 PANTHER HELICASE CHR10-RELATED 3 873 - -
Apr10g0091 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 538 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0091 Apr-Chr10 2140764 2175908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0091 26 548 RAD5 or RAD16-like Gene Family AT1G02670 25.624 5.25e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr10g0091 SNF2_N 6.4e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0091 K20092 - gmx:100797182 1404.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0091 10 2140764 2175908 Apr10g0091 10 2140764 2175908 ECH