Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0089 ATGGGGAGTATGGGTGACTCTGACAGAAAACGACGTCACTTTAGCTCCTTGTCCCCTACACCTGCCGCTGCTACTGCTAAGAAACTACCCTTCTTACCTGTTTCTGAAGACAAAAAGCTTGATATTGTTGTACTTCAGTATCAAAATCAAAAGCTTACACAGAAATTAGAAGCTCAGAAGTTAGAATATGCAGCTTTTGAGAATAAATTTTCTCAACTGAAGCAGAGGCAAAGATCATATGATTCCACTTTAGCAGTGGTCAAGAACTCTTGGGAACATCTGGTTAATGATTTGGAGTCATCTTCAGAACGTACTAGAGAGTCAAGCAGCAAATCAAATTCTAGATTTGCATCAGTCATGGAAGATGGTAGTCCGTCTACTGTTCAGGATGTTTTCCTTAGCAGACTTATGCAAACTGGTGCAACTGAATGTTCCTCCACATATAACTTTGCAAATCAAATGGAAGAGCATAGAGAAATTACTACTGAAAAAGCTAAAAGCGTTTTAAAAAATATAGTGACTGCTATTGATAACTTTTGGGTTCTGAAGGATGGATTGCATGCTGCATTACTGAAAAAGCTTCCTGGAGATGTTTTATGTAGGCAGAAATTGTCTGCTGATCTAGAATTGGAAGTTAAAAACTTGAGATTGGAATTCAGTGAACTTCATTTAAAGCACAAGACTATTGCAAGTGAGTTCCAAATTCGGAGAGATATTTATGCCAAAAATAAAGCTCACCTTGAAAGATTAAAAGGGGAACTGGCAAGCACTGTTGCAGATTTAGATGAAAGCAATCACAAACTTGCAACTCTTAAGGCAGAAAGAGATGCAGCAAAAGGGGCAGTTCTCCCAGTATTAAATGTTGGAAGTACGCACATTGCCAGTGATAAGATCAGAGACAAGCAAAAGGATTTGGACCAAGGTTCAACTCGATTAATGGAGCTGAAAAGTCTTCATGAGGAAAGAATAAGATTATTACAGCAGTTGTGTGATCTTCAGAACACTTTGAAGAATTTGTCGTGTATTACTTCTTCCCCTGCATTCCAATTGGTTAGAGAGCAGATAGAGAAGTCAAAATCAGAAGTTCTTGAGTACCAGGCGTTGTATGAGAAACTACAGGTTGAGAAGGATAATCTTGCTTGGAGGGAGAGGGAGTGGTACATTAAAAATGATTTAGCAGATGTTTTTCAAAGATCTGTGGCAGTTTCAGATTTTAGAGTGGCTGATATACGCTCTGAGATACAGAAGCAGATAGAGGAAAGAAATGTGATTGAAAATAAGCTGAACGAGGAAGCAAGAGAACCAGGAAGGAAACAAATTATTGCAGAATTTAAATCTCTGGTTTCTTCGTTTCCTGAGGAAATGGGGTCTATGCAAAGCCAACTAAGTAAGTATAAAGAATCAGCTTCGGATATCCATTCTCTCCGAGCAGATGTGCAGTCTGTTTCTAGTATTCTTGACAGAAAGGTAAATGAATGTGATGTATTATCTGTTAGGTCTACTGGTCAACTTACTGAGATAAAGAGGCTACTTGCTGTGGCTCAAGACTTGAGAGAGAGTGAGCGGGACTTGAAGTTGATATTGGAAATGTTTAGACGTGAGTCCATTGATTCAAGGGATGTTATGGATGCGCGGGATGCAGAGTACAGAGCATGGGCCCGTGTTCAAAGTTTGAAATCATCTCTAGATGAGCACAACTTAGAACATCGAGTTAAGACAGCCATTGAAGCAGAGGCTAAATCTCAACAAAGGCTGGCTGCTGCTGAAGCTGAAATAGCAGACATGAGACAGAAATTAGAAGCTTCTAAAAGGGAAATGTATAAACTGTCTGATGTCTTGAGATCTAAGAACGAAGAAAATGAGGCCTACTTATCTGAAATAGAGACAATTGGACAAGCATATGATGACATGCAAACTCAAAACCAACACCTGCTGCAGCAGATTACCGAGAGAGACGATTATAATATTAAGCTTGTTTTAGAGGGTGTAAGGGCAAGACAGAAGCAGAATTCATTGGTCATGGAGAAGCGGGTAATGGAACAAGAGATCCAGCAAGCAAGCATATCCCTGAATTTATATGATATGAAAGCTTCAAGAATTGAGGATCAGTTAAAGTTTTGTTCAGATCAGCTCCAAAGACTTGCAGAGGATAAGCTTGAAAGTTCTGCTGCTTGGGAAAATACACAAAGAAGGCTGTTTGATATTAGAAAACAATCTCAACTGGTTAGGGATACAGTGGTGGAAATGCATTCTACAATTGGAAGTAGTCGAGTGATTCGTATGGAGTTACAAGTAGAACTTGAGAAAGAAAGGTTTGCCAAGAAAAGAGTAGAGGAGGATCTGGAGGTTGCTCGGAGAAAGTTTTTATGCATTAAAGAACAGAATGAGGGCTCCTCCTTAACTGAAAAGCTTCAGCAGGAACTTGAAGAGTATAGGGAAATTGTCAAGTGCAGTGTCTGCCAAGACAGAGCAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCTACTCTTGTATCCAGAAAGTTGCTGGGAGTAGGTATCGCAAATGTCCACAATGTGCTGCTAGCTTTGGGGCTAATGATGTTAAGTCTGTTTATTTGTAA 2610 0.3958 MGSMGDSDRKRRHFSSLSPTPAAATAKKLPFLPVSEDKKLDIVVLQYQNQKLTQKLEAQKLEYAAFENKFSQLKQRQRSYDSTLAVVKNSWEHLVNDLESSSERTRESSSKSNSRFASVMEDGSPSTVQDVFLSRLMQTGATECSSTYNFANQMEEHREITTEKAKSVLKNIVTAIDNFWVLKDGLHAALLKKLPGDVLCRQKLSADLELEVKNLRLEFSELHLKHKTIASEFQIRRDIYAKNKAHLERLKGELASTVADLDESNHKLATLKAERDAAKGAVLPVLNVGSTHIASDKIRDKQKDLDQGSTRLMELKSLHEERIRLLQQLCDLQNTLKNLSCITSSPAFQLVREQIEKSKSEVLEYQALYEKLQVEKDNLAWREREWYIKNDLADVFQRSVAVSDFRVADIRSEIQKQIEERNVIENKLNEEAREPGRKQIIAEFKSLVSSFPEEMGSMQSQLSKYKESASDIHSLRADVQSVSSILDRKVNECDVLSVRSTGQLTEIKRLLAVAQDLRESERDLKLILEMFRRESIDSRDVMDARDAEYRAWARVQSLKSSLDEHNLEHRVKTAIEAEAKSQQRLAAAEAEIADMRQKLEASKREMYKLSDVLRSKNEENEAYLSEIETIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQNSLVMEKRVMEQEIQQASISLNLYDMKASRIEDQLKFCSDQLQRLAEDKLESSAAWENTQRRLFDIRKQSQLVRDTVVEMHSTIGSSRVIRMELQVELEKERFAKKRVEEDLEVARRKFLCIKEQNEGSSLTEKLQQELEEYREIVKCSVCQDRAKEVVITKCYHLFCYSCIQKVAGSRYRKCPQCAASFGANDVKSVYL* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0089 869 SUPERFAMILY RING/U-box 809 866 - -
Apr10g0089 869 PANTHER RING FINGER PROTEIN-RELATED 1 869 IPR013956 GO:0004842|GO:0010390
Apr10g0089 869 Coils Coil 697 717 - -
Apr10g0089 869 Coils Coil 355 375 - -
Apr10g0089 869 MobiDBLite consensus disorder prediction 1 15 - -
Apr10g0089 869 CDD RING-HC_BRE1_like 815 856 - -
Apr10g0089 869 Pfam Zinc finger, C3HC4 type (RING finger) 815 857 - -
Apr10g0089 869 ProSiteProfiles Zinc finger RING-type profile. 817 855 IPR001841 -
Apr10g0089 869 Coils Coil 571 605 - -
Apr10g0089 869 Coils Coil 42 76 - -
Apr10g0089 869 SMART ring_2 817 855 IPR001841 -
Apr10g0089 869 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 1 869 - -
Apr10g0089 869 ProSitePatterns Zinc finger RING-type signature. 832 841 IPR017907 -
Apr10g0089 869 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 798 869 IPR013083 -
Apr10g0089 869 Coils Coil 205 225 - -
Apr10g0089 869 MobiDBLite consensus disorder prediction 1 22 - -
Apr10g0089 869 Coils Coil 760 794 - -
Apr10g0089 869 Coils Coil 247 281 - -
Apr10g0089 869 Coils Coil 407 434 - -
Apr10g0089 869 MobiDBLite consensus disorder prediction 98 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0089 Apr-Chr10 2044321 2068761 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0089 817 868 C3H Transcription Factor Family AT2G42030 35.849 4.75e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0089 K10696 - gmx:100790337 1413.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0089 10 2044321 2068761 Apr10g0089 10 2044321 2068761 ECH