Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0088 ATGGAAAGTGATGCTCGGGAAAACTTGTTTGGCATAACCTGCACCTCCACTTCCATCACCATTCCTACTTGCTCACCCTCATCACCAACATCTTCTACTTCATGCACCAACCAAGACTCCAAACCAAGTCCTCCAAATGAATCAACAACAACTGGAAACTCCGAAAATGGCAAGGAGTGCAAGAAAAGACAAAGAAATGACAATGGGAACAAACACCCAAGTTACAGAGGTGTGAGAATGAGAACATGGGGTAAATGGGTGTCTGAGATCCGTGAGCCAAAGAAGAAGTCAAGAATATGGCTTGGAACATACCCCACTGCAGAAATGGCAGCAAGAGCACATGACGTGGCAGCTTTAGCCATCAAGGGTGATTCAGCTTACCTCAATTTCCCCAATTTGGCTCATGATCTTCCAAGGCCTATCACCACATCTCCCAAGGACATTCAAGCTGCTGCTGCAAAAGCAGCAACAACATTCTTTGAAGATGCTAAACATTGCCAAGCCGAAGCAGAACATAACCAAGCTGAACAAGCTTCATCTTCAACTCTGTCTTTGGACAACACTGATGCAGAACAAATTCTCGCAGAACTAGCTTCATCTTCAACTCTATCCATGGACAGTACTCAAGAGTCTTCATGTTCTCCCTCTACTGCAGACGATGACACACTATTTGACCTACCAGATCTTTTTCCTGATGGAAACACTGGACTATTCTCCTATTCTTCTTCTTGGCATTTATGTGCAGTTGACAGTGGATTCAAGCTTGAAGAGCAATTTTTGTGGGAGAATTACTAG 795 0.4403 MESDARENLFGITCTSTSITIPTCSPSSPTSSTSCTNQDSKPSPPNESTTTGNSENGKECKKRQRNDNGNKHPSYRGVRMRTWGKWVSEIREPKKKSRIWLGTYPTAEMAARAHDVAALAIKGDSAYLNFPNLAHDLPRPITTSPKDIQAAAAKAATTFFEDAKHCQAEAEHNQAEQASSSTLSLDNTDAEQILAELASSSTLSMDSTQESSCSPSTADDDTLFDLPDLFPDGNTGLFSYSSSWHLCAVDSGFKLEEQFLWENY* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0088 264 CDD AP2 73 133 IPR001471 GO:0003700|GO:0006355
Apr10g0088 264 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Apr10g0088 264 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 189 - -
Apr10g0088 264 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 192 264 - -
Apr10g0088 264 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Apr10g0088 264 Gene3D AP2/ERF domain 74 132 IPR036955 GO:0003700|GO:0006355
Apr10g0088 264 MobiDBLite consensus disorder prediction 17 76 - -
Apr10g0088 264 MobiDBLite consensus disorder prediction 199 218 - -
Apr10g0088 264 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Apr10g0088 264 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Apr10g0088 264 PANTHER ETHYLENE RESPONSE FACTOR 3 189 - -
Apr10g0088 264 PANTHER ETHYLENE RESPONSE FACTOR 192 264 - -
Apr10g0088 264 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Apr10g0088 264 MobiDBLite consensus disorder prediction 56 74 - -
Apr10g0088 264 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Apr10g0088 264 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Apr10g0088 264 MobiDBLite consensus disorder prediction 17 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0088 Apr-Chr10 2030629 2031423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0088 62 260 AP2-EREBP Transcription Factor Family AT2G44940 52.133 4.05e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr10g0088 AP2 7.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0088 - - pvu:PHAVU_008G141000g 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0088 10 2030629 2031423 Apr10g0088 10 2030629 2031423 ECH