Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0072 ATGACTTCTGGACTTAGCCACGGAGATGGCTCCCATGGCAATACTACATCAAAGCCAACCCACTTTTTCAGGATCATTCTCCCAGATACCCTTTTGCACGGAAAGCTTAGAATTCCAGCAAAGTTTGTGAGAAAATATGGAGAACACTTATCCAACACAATGTTTCTTAAGCTTTCAAACGGTACAGAATGGAAAGTAAATTTGGAGAAACGTGAGGGTAATGTTTGGTTTGAAAAAGGGTGGAAAGAGTTTGTGGAGTGTCACTCTTTAGCCCATGGGCACTTTTTGGTTTTCAGATATGATGGAACATCCCATTTTCATGTTCTCATCTTTGATATGAGCACCATGGAAATAGACTATCCTGTGAACAAGGTAAATCGTAAAAGGGCTAGCAACAGTGAAGAAATTCAACCACATAAGACACGGAAAACAAATGGAAATAACAGAGACGAGAGAAATTCCAATTTACAAGGCACTGCTTTTCATCAAACATTCAGAGACTACAAAGGAAGGTTGAAGAATTCAAATGAAATGAAGAGAAACATTGATCTGCATACTGAAAGGTCAGCTATTAGTAAATGTGTAGCTCGTGAAGCTGCACGCGATACTTCCTTCACAATGATAATAAAATCATGCCACCTAAATAGGAAAAGCTTGTATCTGCCAAAGGGGTCACTAAAGGGCTACATCAAACCTGGTGTACAAAATGTTATGCTGCTGGTTGGGAATAAATCTTGGACGGTTACTTTGATCCATTACCAAAATAAATCAACGAGCTACTTTTCAGCAAATTGGTCAGCATTTGCAAGGGAAAACAATTTAGAAAAAGGAGATGCTTGCTTGTTCCAGGGCCTCAACAATGGTGATGACATAGTGATGAAGGTTTCCATTTCTAAACGCTCTTCTGTTAAGCCAGAAGTGGTATTAACCTAA 933 0.3923 MTSGLSHGDGSHGNTTSKPTHFFRIILPDTLLHGKLRIPAKFVRKYGEHLSNTMFLKLSNGTEWKVNLEKREGNVWFEKGWKEFVECHSLAHGHFLVFRYDGTSHFHVLIFDMSTMEIDYPVNKVNRKRASNSEEIQPHKTRKTNGNNRDERNSNLQGTAFHQTFRDYKGRLKNSNEMKRNIDLHTERSAISKCVAREAARDTSFTMIIKSCHLNRKSLYLPKGSLKGYIKPGVQNVMLLVGNKSWTVTLIHYQNKSTSYFSANWSAFARENNLEKGDACLFQGLNNGDDIVMKVSISKRSSVKPEVVLT* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0072 310 SMART B3_2 22 114 IPR003340 GO:0003677
Apr10g0072 310 SMART B3_2 204 301 IPR003340 GO:0003677
Apr10g0072 310 MobiDBLite consensus disorder prediction 128 154 - -
Apr10g0072 310 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Apr10g0072 310 MobiDBLite consensus disorder prediction 128 149 - -
Apr10g0072 310 Gene3D - 185 302 IPR015300 -
Apr10g0072 310 CDD B3_DNA 21 112 IPR003340 GO:0003677
Apr10g0072 310 PANTHER B3 DOMAIN-CONTAINING 12 299 - -
Apr10g0072 310 CDD B3_DNA 205 282 IPR003340 GO:0003677
Apr10g0072 310 Gene3D - 14 115 IPR015300 -
Apr10g0072 310 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 12 299 - -
Apr10g0072 310 SUPERFAMILY DNA-binding pseudobarrel domain 16 114 IPR015300 -
Apr10g0072 310 Pfam B3 DNA binding domain 208 299 IPR003340 GO:0003677
Apr10g0072 310 Pfam B3 DNA binding domain 27 112 IPR003340 GO:0003677
Apr10g0072 310 ProSiteProfiles B3 DNA-binding domain profile. 204 301 IPR003340 GO:0003677
Apr10g0072 310 SUPERFAMILY DNA-binding pseudobarrel domain 204 293 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0072 Apr-Chr10 1707382 1708896 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0072 22 135 B3 DNA Binding Superfamily AT1G49475 40.517 3.43e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr10g0072 B3 6.7e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0072 - - aprc:113849508 639.802