Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0071 ATGACTTCTAAACTTCACCATGGAGATGGCTGTGACGATGGTGCATCAAAGCCAATCCACTTCTTCAGGATCATCCACCGTGACAATCTTATTATGCAAGAAAAGCTAAGGCTTCCAGTAAGGTTTGTGAGGAAATATGAAAAACATTTACCCAACACAATGTTTCTTAAGCTTCCAAATGGTGCAGAATGGAAAGTAAATTTGGAGAAAAGTGATGGTAGTGTTTGGTTTCAAAAAGGGTGGAAAGAGTTTGTGGAGTATCACTCTCTAGCCCATGGGAACTTTTTGGTTTTCAGATATGATGGAGCATCCCATTTTCATGTACTCATCTTGGATCTCAGTACAATGGAAATAGACTACCCTGTCAACAAGTCTCATAAAAGGGCCAGCAAAAGAGAAGAAATTCAACCACGCAAGACACAGAAAACCAATGGAAATATAAAAAATGAGAGTGATTCCAAATTGAAGGAAGCCTTTCATAAAAAATTCAGAGACTGCAAAGGCATGATTCTAGATTCCAAGCGTAGGTTCAAAAAACACACTGAAGGGTCATCCATTAGTAATCGTAGAACTCATGATGCTGCTGGCAACACTTCCTTTACTGTGATGATAAAATCAAGCCACTTAAATAAGTACATGTATCTGCCAAAGGGGTCACTGAAGGGCTACATCAAACCTGGTGGACAAAATGTCACCCTGCTGGTTAGGGATAAATCATGGAGGGTTAATTTGATTCATTACCAAGATAAATCAACTAGTTATTTTACTGCACATTGGTCAACTTTTGCTAGGGAAAACCATTTAAAAAAAGGAGATACTTGCTTATTTCAACTCCTGGAGAGTAGGGGTGACATGGTGATGAAGGTTTCCATTTCCAATTAA 882 0.3878 MTSKLHHGDGCDDGASKPIHFFRIIHRDNLIMQEKLRLPVRFVRKYEKHLPNTMFLKLPNGAEWKVNLEKSDGSVWFQKGWKEFVEYHSLAHGNFLVFRYDGASHFHVLILDLSTMEIDYPVNKSHKRASKREEIQPRKTQKTNGNIKNESDSKLKEAFHKKFRDCKGMILDSKRRFKKHTEGSSISNRRTHDAAGNTSFTVMIKSSHLNKYMYLPKGSLKGYIKPGGQNVTLLVRDKSWRVNLIHYQDKSTSYFTAHWSTFARENHLKKGDTCLFQLLESRGDMVMKVSISN* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0071 293 MobiDBLite consensus disorder prediction 125 139 - -
Apr10g0071 293 Gene3D - 178 293 IPR015300 -
Apr10g0071 293 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 2 292 - -
Apr10g0071 293 CDD B3_DNA 200 291 IPR003340 GO:0003677
Apr10g0071 293 Gene3D - 14 115 IPR015300 -
Apr10g0071 293 SUPERFAMILY DNA-binding pseudobarrel domain 196 291 IPR015300 -
Apr10g0071 293 PANTHER B3 DOMAIN-CONTAINING 2 292 - -
Apr10g0071 293 Pfam B3 DNA binding domain 29 111 IPR003340 GO:0003677
Apr10g0071 293 Pfam B3 DNA binding domain 200 288 IPR003340 GO:0003677
Apr10g0071 293 MobiDBLite consensus disorder prediction 125 150 - -
Apr10g0071 293 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Apr10g0071 293 ProSiteProfiles B3 DNA-binding domain profile. 198 293 IPR003340 GO:0003677
Apr10g0071 293 SUPERFAMILY DNA-binding pseudobarrel domain 16 113 IPR015300 -
Apr10g0071 293 SMART B3_2 21 114 IPR003340 GO:0003677
Apr10g0071 293 SMART B3_2 200 292 IPR003340 GO:0003677
Apr10g0071 293 CDD B3_DNA 20 112 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0071 Apr-Chr10 1699772 1701025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0071 18 290 B3 DNA Binding Superfamily AT3G18990 28.657 7.73e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr10g0071 B3 6.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0071 - - aprc:113849508 382.104