Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0067 ATGGCTTTACATAATGATATCTTCGCCGTTAGATACGACGAGAAGGAGATGAAAGGTCTTAACGTTGACACAAATTTTTCTTCTTCCTTCGACCCACAGAGAAGATATGAATGGCACAATTTTTGGGATGACGTGGAATCAATTCTGCCAACAACAAATATCACGTGGTTGGACACTTCCAAGGTAGAAGAAGCCAGATGGGAGCAAACGGAAGAGCAAGAAAATGTGAAAAAACCATTCAGTGATTTATCAAATATTCAAAGCAAGGCATTGTTGACTGTTGCTGATCAGAAGCAATCAGAAACGCGTTTGGATAATTCCAAAACAGAAAAAGAAGAAAGATTGAAGAAACAGTCAAGTATTCAAAGCATTCAAGAAGAGGCATTGTCAACGTTTTCTAAGAAACCCGCGGCGGCTGATGAGATGCATAGTCTCCGAACAGAAGAAGTGACGCCGGTGGAAAAGAAAGAACCTGAGATGGCGTTGGATGATCGATCAGATAGGAGCTGGGCTATTTTTGTGAGAAAGAAAAAGAGATGTAATCATTGTGGTAGCACAGAAACACCTCAATGGAGGCCAGGTCCAACGGGGAGAAGTACACTGTGCAATGCATGTGGTATGCGATATAAGTCAGGAAAGCTATTGCCTGAATATAGACCAAGGTCAAGTCCAGCTTTTGATGGAAGAAAGCATTCAAATTTTCACAAAAGGATAATGCGCATGCGAAGATTTTCAACACCAGAGTAA 747 0.4123 MALHNDIFAVRYDEKEMKGLNVDTNFSSSFDPQRRYEWHNFWDDVESILPTTNITWLDTSKVEEARWEQTEEQENVKKPFSDLSNIQSKALLTVADQKQSETRLDNSKTEKEERLKKQSSIQSIQEEALSTFSKKPAAADEMHSLRTEEVTPVEKKEPEMALDDRSDRSWAIFVRKKKRCNHCGSTETPQWRPGPTGRSTLCNACGMRYKSGKLLPEYRPRSSPAFDGRKHSNFHKRIMRMRRFSTPE* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0067 248 MobiDBLite consensus disorder prediction 101 120 - -
Apr10g0067 248 PANTHER GATA TRANSCRIPTION FACTOR 97 245 - -
Apr10g0067 248 Gene3D - 174 225 IPR013088 GO:0006355|GO:0008270
Apr10g0067 248 ProSiteProfiles GATA-type zinc finger domain profile. 174 210 IPR000679 GO:0006355|GO:0043565
Apr10g0067 248 MobiDBLite consensus disorder prediction 139 162 - -
Apr10g0067 248 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 177 236 - -
Apr10g0067 248 PANTHER GATA ZINC FINGER FAMILY PROTEIN 97 245 - -
Apr10g0067 248 SMART GATA_3 174 224 IPR000679 GO:0006355|GO:0043565
Apr10g0067 248 MobiDBLite consensus disorder prediction 97 162 - -
Apr10g0067 248 CDD ZnF_GATA 179 230 IPR000679 GO:0006355|GO:0043565
Apr10g0067 248 Pfam GATA zinc finger 180 213 IPR000679 GO:0006355|GO:0043565
Apr10g0067 248 ProSitePatterns GATA-type zinc finger domain. 180 205 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0067 Apr-Chr10 1658679 1659425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0067 178 243 C2C2-Gata Transcription Factor Family AT3G45170 63.636 8.46e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr10g0067 GATA 1.6e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0067 - - aprc:113849497 502.671