Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0066 ATGGATCGTTTGGTTCCTGTATCTAGCAGAACCCGTAGCAAGAAATTTTTAAACCTGTTGAATGTTTCAAACACTGGATCATCCTCGACTAAGCGGAGAATGAGTGTCAAGAGTGGTGTAATGGCTGAGAAGAGGAAGAGGAGGAGAATGAAGAAAAGGATAGATGGAGATGACGTGGTTTGCTTGGGAGAAAACTTGCTTGAAGAGGGTGCAAGTGGGAAGATTGAATCTGGGTCTAGAGCTGCACCTTCATTATCTGGTGCTTTGAAGGGTAAAAAGGTAGCTGAACCAGATATTGTATGTTTGGAAGAATGTGATGATGAAGAATCTTGTGAGATGATTAAAATCGATGATAGTGATAATGGTAATGACACTGAAGAGGGGTTGAGGCATTCTGAGAAGATGTTTGAGGTTAATGTTGTTGTTGGTGTTAAAGAGGAAGAGAAGAGTGAAGAAGGGAAAGAGGATTATGTATTTGGCGATAAAGTTGAAAACTTTGGCCATAGTGACACTGGTTGTGGTGGACCTGAATATCCGGCTATAATTACTATTGATTCAGATGGGGATGGTGAGAGTGAGAAAGAACATGGCGTGGGTGAAAGTGGTTCATATGATGAATACGATGATCTTTTGTCTTCAACGGAGAGTGAGGATATGGAGACCAGTGATGAGGATTTTGAAGCTGATGTTGTGAGTGAATACTCAAGCAGTGAACAGAGTGATACCTCTTCTGATGACGATGAGAGGGAGAGCGTGCAGGGGACGTATAGCAAGATGGTGAAGGAGCAGGTGAGAAAGGTGGCGAGTGAAATCAATGAAGTTTTCATTAAAAAAGGTGAAAGGAAAGTTACACAGATAAAGGAGGAGGAGCGTGAAAGGACTCCAACATTTATAAACGACAATGACTCTGGTGAACAAGATCACGATCAATGGATTAGTGTAGATTGTGCCAGTGTGACCAGTAGTGAATCTGAGATTCATGAGGAGGAAGCAAAGAATGCAGCAGAGAAACATGAAGCAAATAGAGGAGAAAAACCAGTAGAAAATTTCATTTCTGATGTCAAAGTCTTTGGTGAGTACATGAAAAATACAGATTGCTCTATGCGTTCTGAAGATGAAGCATTAAAGGATAAAGAAAAACAAGATAGGGATCATCAAAGTATACCACTGACGAAAGAGACAGGAGATTCAACCATGGTCAAGAAAAATGAGAAAAACAATGATGCCAATGAAAATGCCAACCCCAGCTTTAGTAACTGTGTGAATCTTGATGCACATGAAGAAAAAGGGCATCACCATGACAAAGTTACTTGTGTGAGAAGTGTTTCTTCTTTGCCAGTAGTCCTAGAGAAGATAGGAGATTCACCTATGGTCATGAAGAGTGAGAAAAATCATGATGTCAGTGCCAATGCCAGCACTGGTAACTGGGTTAATCTTGATGCACGTGAAGGAAAAAAGCATCATCGTGACACAGTTACAGGTTTGAGAAGTGTTGCTTCTTTGCGAAAAGACCTAGAGAAGATAGGTGTGTCAGTTATAGACAAGAAGAGTGAGAAAAATAACGATGCCAATGCCAATACTATTAACTCTGTGAATCTTGATGCGCATGAAGGAAAAGAGCATGATCATGACAAAGTTACAGGTGTGAGAAGTGTTGCTTCTTTTCCAAAAGACCAAGAGAAGATAGAAGATTCAGTTGAAGTTAAGAAGGAGAACAAGAAGGAATGGGAGCATAAAGATAGGTTTGACAGTAATAATCGTGAGAAGAAGGTAAGGGTGATGGATAATGAATCTGGTTACAAAGATAAGCAGCATGTAGTCCCCATGATGTCATCTAGGACGAAGGAGCAACGTTTAATTAAACTGCTTGCTGAATGCTTTTGGGGCAAACATGATTCGGTAAAAGATGTTGATTCAAACGGGCTAAAAGAAAAGGAGGATGATGTTGATCCGCGTGAGGAGACTCAGCCACCAGCTTGTAGAGAGACAGTCCCTTTGAATTGGACCTTAAAGAAGGTTGAACCCATTGAAAAATCAGAGTCTGAGAAGGAGCTGGATATGTTGTGGGAAGAAATGGAAATGTTGCTTAGACTTGAAGAAATCAATTCCCAGGTTGGCAGTATAGGGACAAATGAAGCAAGAGAAAATCAAGTTTCCTTGTGTAAGCATGACTTTTATCTTGATGAACAGATTGGGATATTGTGCAGATTGTGTCTTTGGGTTGCCACTGAGATCAAATATGTCACCCCACCGTTTGTGGACGAGTTTCATTCTGAAGGATCAGGTAAAAGGGTGTCATCTGGTGGAGGGAACACCTCACACATTGATGGGGTTCGGTTTAATGACTCTGGTGGTGACTCAGAGGCAGTTTGGTCTCACAATGAAGGCACAGTTTGGGACCTTATTCCTGACATTAAAGAGAGCTTGTATCCTCATCAACAAGAAGGCTTTGAGTTTATTTGGACTAGATTGGCAGGAACCATTGACCTCTGCACGTTGAAGAATGTTGATCCTTGTAGTGAAGGTGGTTGCATTATTTCTCATGCTCCTGGAACTGGAAAGACAAGGTTGACCATGGTGTTTCTTCAGACATATTTGCAAGTGTTTCCAAAATGCCTACCAGTTATCATTGCTCCTGCTAACTTGTTGCTTACTTGGGAAGATGAGTTGAGAAAGTGGGACATAGGAATCCCATTCCATAACTTCAACAATCCTGAATTATCAGGGAAAGAAAATGTTGATGCTGCTAAAGAGCTTGAGTGGTCTAGAAGTCTAAGGCAGAATAAGGATGCCATACGCATGTTGAAGTTGTGTTCGTGGTACAAAGAGAAGAGTATTCTATTAATCAGCTATCATTTGTATGAGAAGCTTGCAGGGGGCATGTCTGAAGTTGATGATAAAAAGGGGAAGAAAAGAGGGAACATGCAAACCGAAAAGAAACGCGCAAGGAGTCTGGTGATCATTGAAAGTGAAATGGGAAAGGTTCTGCGTGACTATCCTGGTTTGTTGGTTCTTGATGAAGGGCACACGCCTCGCAATCAGCGTAGCTGTATTTGGAAGGTTCTCTCAGAAAGTAGAACTCAAAAGCGAATCCTTCTTTCGGGGACTCCTTTCCAGAACAATTTTCTGGAACTCTATAACATTCTGTGCCTAATGAAACCATCGTTTCCTGACAGCATACCTCAAGAACTAAAGAAATTTTGCCTGAGTAGACTAATGCATGAAAAGAAAGCACCAAAAGACGTGAGTTGGGAACCAGTTTCTTCTGCAAATCCTGCTGATCATAAAATAAACCAGCTGAAATTTCTGATGGATCCGTTTGTTCATGTTCACAAAGGTAGCATTCTTAAGAAGAACCTTCCTGGGTTGAGAGATTGTGTGCTGATTTTGAAGCCAGACAGTTTGCAGCAGGAAATTCTAGAGAGCATTGAAGGTTCTCAGAACATATTGAATTTTGAACACAAGTTGGCTTTGGTCTCAGTCCATCCATCCCTTTTCCTCAAATGCTCTCTGACAGAAAAAGAAGAATCTGTTATTGACGGGGATCAGCTGGAAAAACTTAGATTGGACCCTTATGGAGGAGTCAAAACCAAATTTTTGATGGAGTTTGTAAGACTGTGTGATGCGTACAATGAGAAAATTATTGTTTTCAGCCAATACATTGATACTTTATGCTTAATTAAAGACCAACTTGGGTCCGCTTTTAATTGGTCTGATGGGAAGGAAGTGTTGTATATGTATGGCAGGCTTGACCAGAAGCAAAAGCAATTCCTCATTCATCACTTCAATGATGCAAATAGCCAAGCAAAGATTTTGCTTGCATCTATAAAAGCATGTTCTGAGGGCATTAACTTAATTGGAGCTTCAAGGGTTGTGCTTCTTGATGTCGTTTGGAACCCCTCAGTGGAAAGGCAAGCTATTTGCCGAGCCTATAGACTTGGCCAAAAGAAGGTTGTTTACACTTATCATCTCCTTGCACAGGGCACCACTGAATGCACAAAGTACTGTAAACAAGCACAGAAGGACCGGTTATCTGAACTGGTTTTTTCAGATAGAAATAATGAAAATGATAAGCCTAAGAGTTGTCCTGTAACATTTGAGGATTCAGTTCTTGATCACATGGTTCAGCATGAAAAACTCAAAGACATGTTTAGTGAATGTGTGGTACATCCAAGGGAAAAAGATTTAGAGAATTTTGGCCCTTGA 4206 0.4087 MDRLVPVSSRTRSKKFLNLLNVSNTGSSSTKRRMSVKSGVMAEKRKRRRMKKRIDGDDVVCLGENLLEEGASGKIESGSRAAPSLSGALKGKKVAEPDIVCLEECDDEESCEMIKIDDSDNGNDTEEGLRHSEKMFEVNVVVGVKEEEKSEEGKEDYVFGDKVENFGHSDTGCGGPEYPAIITIDSDGDGESEKEHGVGESGSYDEYDDLLSSTESEDMETSDEDFEADVVSEYSSSEQSDTSSDDDERESVQGTYSKMVKEQVRKVASEINEVFIKKGERKVTQIKEEERERTPTFINDNDSGEQDHDQWISVDCASVTSSESEIHEEEAKNAAEKHEANRGEKPVENFISDVKVFGEYMKNTDCSMRSEDEALKDKEKQDRDHQSIPLTKETGDSTMVKKNEKNNDANENANPSFSNCVNLDAHEEKGHHHDKVTCVRSVSSLPVVLEKIGDSPMVMKSEKNHDVSANASTGNWVNLDAREGKKHHRDTVTGLRSVASLRKDLEKIGVSVIDKKSEKNNDANANTINSVNLDAHEGKEHDHDKVTGVRSVASFPKDQEKIEDSVEVKKENKKEWEHKDRFDSNNREKKVRVMDNESGYKDKQHVVPMMSSRTKEQRLIKLLAECFWGKHDSVKDVDSNGLKEKEDDVDPREETQPPACRETVPLNWTLKKVEPIEKSESEKELDMLWEEMEMLLRLEEINSQVGSIGTNEARENQVSLCKHDFYLDEQIGILCRLCLWVATEIKYVTPPFVDEFHSEGSGKRVSSGGGNTSHIDGVRFNDSGGDSEAVWSHNEGTVWDLIPDIKESLYPHQQEGFEFIWTRLAGTIDLCTLKNVDPCSEGGCIISHAPGTGKTRLTMVFLQTYLQVFPKCLPVIIAPANLLLTWEDELRKWDIGIPFHNFNNPELSGKENVDAAKELEWSRSLRQNKDAIRMLKLCSWYKEKSILLISYHLYEKLAGGMSEVDDKKGKKRGNMQTEKKRARSLVIIESEMGKVLRDYPGLLVLDEGHTPRNQRSCIWKVLSESRTQKRILLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFCLSRLMHEKKAPKDVSWEPVSSANPADHKINQLKFLMDPFVHVHKGSILKKNLPGLRDCVLILKPDSLQQEILESIEGSQNILNFEHKLALVSVHPSLFLKCSLTEKEESVIDGDQLEKLRLDPYGGVKTKFLMEFVRLCDAYNEKIIVFSQYIDTLCLIKDQLGSAFNWSDGKEVLYMYGRLDQKQKQFLIHHFNDANSQAKILLASIKACSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYTYHLLAQGTTECTKYCKQAQKDRLSELVFSDRNNENDKPKSCPVTFEDSVLDHMVQHEKLKDMFSECVVHPREKDLENFGP* 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0066 1401 MobiDBLite consensus disorder prediction 322 346 - -
Apr10g0066 1401 MobiDBLite consensus disorder prediction 637 659 - -
Apr10g0066 1401 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 835 1055 IPR014001 -
Apr10g0066 1401 MobiDBLite consensus disorder prediction 286 346 - -
Apr10g0066 1401 CDD SF2_C_SNF 1171 1325 - -
Apr10g0066 1401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 800 1069 IPR027417 -
Apr10g0066 1401 MobiDBLite consensus disorder prediction 286 309 - -
Apr10g0066 1401 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1202 1355 IPR001650 -
Apr10g0066 1401 MobiDBLite consensus disorder prediction 165 257 - -
Apr10g0066 1401 Pfam Helicase conserved C-terminal domain 1207 1314 IPR001650 -
Apr10g0066 1401 Coils Coil 559 579 - -
Apr10g0066 1401 MobiDBLite consensus disorder prediction 637 657 - -
Apr10g0066 1401 Gene3D - 790 1108 IPR038718 -
Apr10g0066 1401 SMART ultradead3 805 1063 IPR014001 -
Apr10g0066 1401 Pfam SNF2-related domain 819 1142 IPR000330 GO:0005524|GO:0140658
Apr10g0066 1401 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 503 1398 - -
Apr10g0066 1401 MobiDBLite consensus disorder prediction 365 390 - -
Apr10g0066 1401 MobiDBLite consensus disorder prediction 210 231 - -
Apr10g0066 1401 MobiDBLite consensus disorder prediction 23 51 - -
Apr10g0066 1401 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 503 1398 IPR044567 GO:0080188
Apr10g0066 1401 MobiDBLite consensus disorder prediction 187 203 - -
Apr10g0066 1401 MobiDBLite consensus disorder prediction 365 416 - -
Apr10g0066 1401 Gene3D - 1121 1396 IPR027417 -
Apr10g0066 1401 SMART helicmild6 1229 1314 IPR001650 -
Apr10g0066 1401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1353 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0066 Apr-Chr10 1623179 1627896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0066 1212 1351 RAD5 or RAD16-like Gene Family AT5G43530 39.286 3.06e-18 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr10g0066 SNF2_N 2.4e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0066 K10875 - gmx:100806733 1190.25