Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0055 ATGATCCCAATTTCATTTGTGGAGAAACATGGAGAAGCCTTGCCAAGTACTATATTTCTTAAGCCTCCAAATGGTACGGAATGGAAATTAAATTTGGTAAAACGTGATGATAAAATATGGTTTCAGAAGGGATGGAAAGAATTTGCGGAGTATCACTCTCTAGGCCACGGGCATCTCTTGGTCTTCAGATATGAAAGAACTTCCCATTTTCAGGTACAAATCTTTGATATGAGTGCCTTAGAGATAAACTACCCATTCGAAAGTGTAAATGGTAAAATGGCCTCCAATGATCAAGAAAGCAACCCTCCAAATAATGAAAGCATGGAACATTACAAACTAAGTCAAAAGAGGAAAGATAACTCCCCTTTGGAATTTCTTCAACCAAGTAGAAAGAGAACCTGCAAATGTGTTGAAGTTGAGAACATCTTGAAATTGCCAGATACGGTTCTTCATCATACCGACACAAAGTGCGAAGAAAAAGAAGTGATTAGTAATAAGAAAATTACAGTTCCTGATAGAGCAAGTTCTTTTAAGCCTTGTAATCCGTCGTTCTCGATGGTTATGTATCCATCGTACGTGTCTGGTGGTAATATGTGTTTACCATCAAAGTTTTGTAAGATGCACTTTGATGTGCACCAGCAGTATGGAGACACAGATCTTCAGGTGTTGAATGGGAGAGTTTGGCCTGTTAAGTACCAAAAAAGGAAAGCACAAACGAGATTTCATTTCTCCAGGGGATGGAAGACATTTGTCAAAGACAATAACTTGCAAGTAGGTGATGTTTGCACTTTTGAACTCCTTCCTAGGACTAAACTCACCTTCCAGGTTCACATCTTTAGAGAGACAGACAAATCATTTCAAACTGTTCCACATCTGAAGGTAGGATTGATGTTTTAA 897 0.3846 MIPISFVEKHGEALPSTIFLKPPNGTEWKLNLVKRDDKIWFQKGWKEFAEYHSLGHGHLLVFRYERTSHFQVQIFDMSALEINYPFESVNGKMASNDQESNPPNNESMEHYKLSQKRKDNSPLEFLQPSRKRTCKCVEVENILKLPDTVLHHTDTKCEEKEVISNKKITVPDRASSFKPCNPSFSMVMYPSYVSGGNMCLPSKFCKMHFDVHQQYGDTDLQVLNGRVWPVKYQKRKAQTRFHFSRGWKTFVKDNNLQVGDVCTFELLPRTKLTFQVHIFRETDKSFQTVPHLKVGLMF* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0055 298 MobiDBLite consensus disorder prediction 91 109 - -
Apr10g0055 298 MobiDBLite consensus disorder prediction 91 119 - -
Apr10g0055 298 Gene3D - 162 284 IPR015300 -
Apr10g0055 298 PANTHER B3 DOMAIN-CONTAINING 1 281 - -
Apr10g0055 298 Pfam B3 DNA binding domain 185 281 IPR003340 GO:0003677
Apr10g0055 298 Pfam B3 DNA binding domain 2 76 IPR003340 GO:0003677
Apr10g0055 298 Gene3D - 1 79 IPR015300 -
Apr10g0055 298 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 281 - -
Apr10g0055 298 CDD B3_DNA 182 280 IPR003340 GO:0003677
Apr10g0055 298 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
Apr10g0055 298 SUPERFAMILY DNA-binding pseudobarrel domain 1 78 IPR015300 -
Apr10g0055 298 CDD B3_DNA 1 76 IPR003340 GO:0003677
Apr10g0055 298 SMART B3_2 1 78 IPR003340 GO:0003677
Apr10g0055 298 SMART B3_2 184 282 IPR003340 GO:0003677
Apr10g0055 298 ProSiteProfiles B3 DNA-binding domain profile. 183 282 IPR003340 GO:0003677
Apr10g0055 298 SUPERFAMILY DNA-binding pseudobarrel domain 177 281 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0055 Apr-Chr10 1303707 1304889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0055 2 283 B3 DNA Binding Superfamily AT3G18990 30.650 1.66e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr10g0055 B3 3.5e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0055 - - gmx:100819782 340.117