Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0041 ATGAAGTTCAACATTGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATTGACGACGATCAGAAACTGCGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCAGTGGAGATGCACTTGGTGAGGAATTTAAAGGCTATGTGTTCAAAATCACTGGAGGTTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGCGTTCGTCTCTTGCTTCATAGGGGAACTCCTTGTTTCCGTGGATATGGAAGGCGTAATGGAGAGCGAAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTCTGAACTTGGTAATTGTGAAGAAAGGTGAAAATGATTTACCAGGGTTGACTGACATTGAGAAGCCAAGGATGAGAGGTCCAAAAAGAGCATCCAAAATCCGTAAACTCTTCAATCTGTCTAAGGAAGATGATGTTAGGAAGTATGTGAACACATACCGTCGAACATTCACAACAAAATCTGGGAAAAAGGTGAGCAAAGCTCCTAAGATTCAAAGACTGGTCACTCCTCTTACCCTCCAAAGAAAGCGGGCAAGGATTTCTGATAAGAAGAAGAGAATTGCCAAGGCAAAATCAGAGGCAGCTGAGTACCAGAAACTCCTTGCCTCCAGGTTGAAGGAGCAGAGGGAGCGCCGCAGTGAGAGTTTGGCTAAGAGGAGATCCAAGCTTTCTAGCGCTACTAAGGCAGCTGCCCCTGTATAG 750 0.4707 MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVSGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLTLQRKRARISDKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSSATKAAAPV* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0041 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Apr10g0041 249 MobiDBLite consensus disorder prediction 220 249 - -
Apr10g0041 249 Gene3D - 133 234 - -
Apr10g0041 249 Coils Coil 189 216 - -
Apr10g0041 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Apr10g0041 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Apr10g0041 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 245 IPR001377 GO:0003735|GO:0005840|GO:0006412
Apr10g0041 249 PIRSF RPS6e 1 248 IPR014401 GO:0003735|GO:0005840|GO:0006412
Apr10g0041 249 MobiDBLite consensus disorder prediction 220 237 - -
Apr10g0041 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0041 Apr-Chr10 849221 853009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0041 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 72.289 5.44e-120 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0041 K02991 - gmx:100804076 462.225