Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0019 ATGGGGCCAGATGCAGGTTCTTTGTCGTCAGTGGAAAAACAAGCAGAACAACTAAGAATAAACGGCAATAACTACTTCAAAAAATATCGTTTTGGAGCTGCCATTGATGCTTACACTGAGGCAATTACGCTGAGCCCCAATGTTGCAGTGTATTGGACCAATCGTGCAATCTGCCATAGCAAGCGCAATGACTGGAGAAGAGTAGAGGAAGACTCTCGTCACGCTATTGAGCTGGACAATAATTCGGTTAAGGCCCACTATATGTTAGGTCTTGCATTGCTACAGAGAAAAGAATTTGCTAAAGGAATCTTAGAATTGGAGAAGGCTTTGGATCTCTGTAGAGGTGCCCATCCTAACAGTTATATGGTAGAGGAGATACAGAAAGAGTTTAGGAACGCAAAATACACACAGTGGGACCTTTCATCTACTAACCGAACAAGGGAATTGCAGTGCTTGAAACAAGTTTGTGAGTCTGCTTTATGGCATAAACATTCTCTTGATGTTTCCCAATCGGAAGGACTTACAGAAAATGCTACTGCTGCCTATTTACAACAATTAGAAGTTTTAGAAAGAGTGATTAATAAGGTTGCAGAACCTGACATTCCTACTGAGGTGCCAGATTATCTATGCTGTAGAATTACACTTGATATTTTTCGTGATCCTGTTATAACCCCAAGTGGACTTACATACGAGAGGGCAGTGATTCTTGAGCATCTTGAGAAGGTCGGTAAGTTTGAGCCTGTCACACGGGAACCTCTTGATCCATCACAGCTAATACCCAACTTGGCAATAAAGGAAGCGGTTCAAGCATTCTTGGATACTCATGGATGGGCATACAAGACATATTAG 849 0.4193 MGPDAGSLSSVEKQAEQLRINGNNYFKKYRFGAAIDAYTEAITLSPNVAVYWTNRAICHSKRNDWRRVEEDSRHAIELDNNSVKAHYMLGLALLQRKEFAKGILELEKALDLCRGAHPNSYMVEEIQKEFRNAKYTQWDLSSTNRTRELQCLKQVCESALWHKHSLDVSQSEGLTENATAAYLQQLEVLERVINKVAEPDIPTEVPDYLCCRITLDIFRDPVITPSGLTYERAVILEHLEKVGKFEPVTREPLDPSQLIPNLAIKEAVQAFLDTHGWAYKTY* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0019 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 281 IPR013083 -
Apr10g0019 282 Pfam U-box domain 205 277 IPR003613 GO:0004842|GO:0016567
Apr10g0019 282 SUPERFAMILY RING/U-box 200 279 - -
Apr10g0019 282 PANTHER OS08G0113300 PROTEIN 7 281 - -
Apr10g0019 282 ProSiteProfiles U-box domain profile. 204 278 IPR003613 GO:0004842|GO:0016567
Apr10g0019 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 7 281 IPR045200 GO:0000209|GO:0061630
Apr10g0019 282 SUPERFAMILY TPR-like 13 114 IPR011990 GO:0005515
Apr10g0019 282 SMART Ubox_2 208 271 IPR003613 GO:0004842|GO:0016567
Apr10g0019 282 SMART tpr_5 83 116 IPR019734 GO:0005515
Apr10g0019 282 SMART tpr_5 49 82 IPR019734 GO:0005515
Apr10g0019 282 SMART tpr_5 15 48 IPR019734 GO:0005515
Apr10g0019 282 CDD RING-Ubox_CHIP 205 271 IPR045202 -
Apr10g0019 282 Pfam Tetratricopeptide repeat 84 113 IPR019734 GO:0005515
Apr10g0019 282 Gene3D Tetratricopeptide repeat domain 9 145 IPR011990 GO:0005515
Apr10g0019 282 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0019 Apr-Chr10 396853 406528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0019 15 280 U-box Gene Family AT3G07370 64.662 1.78e-128 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0019 K09561 - gmx:100796519 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0019 10 396853 406528 Apr10g0019 10 396853 406528 PCT