Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0012 ATGGAAAACCAATTCTTTCTCAATGCTGGTGTCCCCTCCCAGCTGCATTTTGAGCCTTCAATGCCCACTTGGCAATCTGTATCACACTCTTCTGCCATGGATGTTCAAGTAACGGTTTTGAATTGTTCACCTGAGCAGACCCAAGATTGCTTTTTCACCCCAACATGGGACAAGTCAACGGATCATGGAGTTCAGTTTGATTCAGCTCTTAGTTCAATGGTGTCTTCTCCTGCAGCATCCAATTCCAACATGTCCAATGAGAATTTCGTCATCAGGGAACTGATTGGAAAATTGGGAAATATTGGTAGCTCTGGTGAGATCTCACCTCATTCCCACCCTTTGGTTCCTGCTTCTTCATACATCAATGGCAATAACAGCACCAACACTTCATGTTATAGCACCCCTTTGAGTTCTCCTCCAAAGATGAACATGAACAGAAACAACATACCCTCGGTGGTGAACCACTTGGTGAAAGAAAGCATGCCCAGTATGGGACAATCAATGGCCTTGAATTCCAGTGTGGCAGAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGGAGCTTCAATGGAAGGACTAACCAATTGAGGATGAACAATGCTGAATTGGCTCAGAGATCTGCTTCATTGGTGGAACATGGGAAGCTCCCTAGAGTGTCAAGTAGTCCATCATTGAAAATGCTTGGATCTCAAATGGGTACACAGGAGAACAAGAATTCTCCATTGCAGGACCTAATGGAAGTGGCCAATTCTCAAGATGAATCAACAATCTCTGAACAAATCCCAAATGGGGACACTGTTGTGAAACCTTCCCCTTATGTGAATTCCAGGAAAAGAAAAACTTCTTCCAAAGGAAAAGCCAAAGAAACTTCAACCTCTACCAATCCTCCAATTGCTGCTGAAGCCAGTGAAGACTCAAATGCAAAGAGAAGCAAGCCAAATGAAAGTGAGGGGAATGAAAATGGCCCAGTGAGGGCAGAAGATGAGTCCAAAGGGGGTACTAGTAATGCAGGTGATGAGAAACAGAACAAGAGTAACTCAAAACCTCCTGAGCCACCAAAGGATTACATTCATGTTAGAGCAAGGAGAGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGTTCGGAGGGAGAAAATCAGTGAAAGAATGAAGCTTCTCCAAGATCTTGTCCCAGGTTGCAATAAGGTCACGGGTAAAGCACTTATGCTTGATGAAATTATAAACTATGTTCAGTCATTGCAGCGCCAAGTTGAGTTTCTGTCTATGAAATTGGCTTCTGTTAACACCAGGCTGGATTTTAGTATTGAGAGTCTAATCTCAAAAGATATATTTCAATCAAATAATTCTTTGGCACACCCAATATTCCCACTAGATTCCTCAGCATCATCCTTTTATGGGCAACACCCTCAGCCAAACCCAGCAATCCACACTAACATTCCTAATGGAACTGTGACCCACAGCTCAGTGGACCCATTAGACACTGCTCTTTGCCAAAACCTTGGCATCCAGTTACCTCCCCTAAATGGGTTTAATGAAGGTGGTGGCTCTCAGTATCCAATAACATTCTCTGAAGATGACCTCCACACCATTGTTCAAATGGGATTTGGCCAAACTGCTAATAGGAAAACACCAATTCAACCTCAGAGTTTCAACGGCTCAACTCAAGTACCCCTATGA 1710 0.4357 MENQFFLNAGVPSQLHFEPSMPTWQSVSHSSAMDVQVTVLNCSPEQTQDCFFTPTWDKSTDHGVQFDSALSSMVSSPAASNSNMSNENFVIRELIGKLGNIGSSGEISPHSHPLVPASSYINGNNSTNTSCYSTPLSSPPKMNMNRNNIPSVVNHLVKESMPSMGQSMALNSSVAEFSADPGFAERAAKFSCFGSRSFNGRTNQLRMNNAELAQRSASLVEHGKLPRVSSSPSLKMLGSQMGTQENKNSPLQDLMEVANSQDESTISEQIPNGDTVVKPSPYVNSRKRKTSSKGKAKETSTSTNPPIAAEASEDSNAKRSKPNESEGNENGPVRAEDESKGGTSNAGDEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFSIESLISKDIFQSNNSLAHPIFPLDSSASSFYGQHPQPNPAIHTNIPNGTVTHSSVDPLDTALCQNLGIQLPPLNGFNEGGGSQYPITFSEDDLHTIVQMGFGQTANRKTPIQPQSFNGSTQVPL* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0012 569 Gene3D - 371 446 IPR036638 GO:0046983
Apr10g0012 569 PANTHER BHLH TRANSCRIPTION FACTOR 2 566 - -
Apr10g0012 569 MobiDBLite consensus disorder prediction 232 274 - -
Apr10g0012 569 MobiDBLite consensus disorder prediction 226 365 - -
Apr10g0012 569 CDD bHLH_AtBPE_like 364 449 - -
Apr10g0012 569 Coils Coil 421 441 - -
Apr10g0012 569 MobiDBLite consensus disorder prediction 296 310 - -
Apr10g0012 569 MobiDBLite consensus disorder prediction 314 344 - -
Apr10g0012 569 Pfam Helix-loop-helix DNA-binding domain 378 425 IPR011598 GO:0046983
Apr10g0012 569 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 443 IPR036638 GO:0046983
Apr10g0012 569 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 566 IPR024097 GO:0006355
Apr10g0012 569 SMART finulus 380 430 IPR011598 GO:0046983
Apr10g0012 569 MobiDBLite consensus disorder prediction 549 569 - -
Apr10g0012 569 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 374 424 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0012 Apr-Chr10 160045 162869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0012 1 523 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 44.090 4.02e-112 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr10g0012 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0012 - - gmx:100812081 906.746
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0012 10 160045 162869 Apr10g0012 10 160045 162869 PCT