Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0010 ATGGGTATTTCTAGGGATTCCATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCCTGGAGGAAGAAGAGAAAGTATGAGCTTGGTCGCCAGCCAGCAAACACTAAGTTATCAAGCAACAAGACAGTCAGGAGGATTCGTGTTAGAGGTGGCAATGTGAAATGGAGGGCATTGAGACTGGATACTGGAAATTACTCATGGGGTAGTGAAGCAGTAACTCGTAAGACTCGTATTCTGGATGTGGTTTACAATGCCTCAAACAACGAGCTGGTGCGAACTCAGACCCTGGTCAAGAGTGCTATTGTCCAGGTTGATGCTGCTCCTTTCAAGCAGTGGTACCTTCAGCACTATGGTGTTGATATTGGTAGAAAAAAGAAAGTAGCATCCAAGAAGGAAACTGAGGAGGGTGAAACAGCTGCAGAAGAAACCAAGAAAAGTAACCATGTGCAGAGAAAACTTGAGAAGCGCCAGAAAGATCGCAAACTAGATTCCCACATTGAAGAGCAATTTGGTGGTGGCAGGTTGTTGGCCTGTATTTCTTCTCGCCCTGGTCAATGTGGCAGGGCTGACGGGTACATTCTGGAAGGCAAGGAACTGGAATTTTACATGAAGAAAATCCAGAGGAAGAAGGGAAAGGGTGCTGCTTAA 651 0.467 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKVASKKETEEGETAAEETKKSNHVQRKLEKRQKDRKLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQRKKGKGAA* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0010 216 MobiDBLite consensus disorder prediction 127 162 - -
Apr10g0010 216 Gene3D - 32 159 - -
Apr10g0010 216 Gene3D - 160 213 - -
Apr10g0010 216 CDD Ribosomal_S8e_like 5 195 - -
Apr10g0010 216 PANTHER 40S RIBOSOMAL PROTEIN S8 1 216 - -
Apr10g0010 216 PANTHER 40S RIBOSOMAL PROTEIN S8 1 216 IPR001047 GO:0003735|GO:0005840|GO:0006412
Apr10g0010 216 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Apr10g0010 216 MobiDBLite consensus disorder prediction 11 26 - -
Apr10g0010 216 Pfam Ribosomal protein S8e 5 195 IPR022309 -
Apr10g0010 216 MobiDBLite consensus disorder prediction 1 39 - -
Apr10g0010 216 TIGRFAM eS8: ribosomal protein eS8 1 197 IPR001047 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0010 Apr-Chr10 134846 137335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0010 1 204 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 86.341 7.22e-128 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0010 K02995 - gmx:100500112 398.667