Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr10g0008 | ATGGAAGACTTCGATATTCCCGCCGGCGAGGAAATGGATCTTGGCGAAGATAAGGTCGGCGAGGAGAGAGAGATCGGCAATAGCGGCCTCAAGAAGAAGCTCGTCAAGGAAGGTCAAGGTTTCGAAACCCCTGAAGTTGGCGACGAAGTCCAAGTTCACTACACTGGGACTTTGCTCGATGGGACTAAGTTTGATTCGAGCCGCGATAGGGATTCTCCATTCAGCTTTACGCTCGGACAAGGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCTATTTTCACCATACCTCCTGATCTAGCTTATGGTGAATCTGGTTCCCCTCCAACAATTCCTCCTAATGCAACACTGCAATTTGATGTTGAGCTGCTGTCATGGACTAGTGTGAAGGACATATGCAAGGATGGCGGTATATTTAAAAAGATAATTACTGAGGGGGAGAAGTGGGAGAACCCCAAGGATCCTGATGAAGTATTGGTTAGGTATGAAGCTTGTTTGGAAGATGGGAAGCTTGTAGCAAAGTCTGATGGAGTGGAGTTCACTGTCAGAGAGGGTCATTATTGTCCTGCATTGTCAAAGGCTGTTAAAACAATGAAGAAGGGAGAGAAAGTGATTTTAACTGTTAAGCCACAATATGGATTTGGTGAGAAGGGGAAGCCAGCGCATGGTGATGAAGGTGCAGTTCCACCAAATGCAACATTGCAGATTACTCTTGAGTTAGTGTCATGGAAAACTGTTTCAGAAGTTACTGATGACAAAAAGGTCATCAAGAAGATCCTCAAGGAAGGGGAAGGATATGAACGTCCAAATGAAGGGGCTGTTGTGAAATTGAAACTAATTGGTAAGCTACATAATGGTACTGTCTTTTTGAAAAAGGGCCATGATGAAGAGGAGAAGCTGTTTGAATTCAAAACAGATGAGGAGCAAGTCATTGATGGACTTGATAGAGCTGTATTGACTATGAAGAAGGATGAGGTTGCACTATTGACTATTGCGCCTGAGTATGCTTTTGGTTCGTCAGAGTCCCAGCAAGAGTTGGCTGTGATTCCTCCTAACTCAACAGTGTATTTTGAAGTTGAGCTAGTTTCATTTGAGAAGGAAAAGGAGTCCTGGGATCTGAACAACACTCAAGAGAAACTTGAAGTTGCTAGTAAGAAGAAGGAAGAAGGGAACGTGTTGTTTAAAGCTGGTAAATATGCCAGAGCTTCCAAAAGATATGAAAAGGCTGTGAAGTACATAGAATATGATTCCTCCTTCAATGAGGAGGAGAAAAAGCAGGCCAGGACCTTGAAGGTTGCCTGCAATCTGAACAATGCTGCTTGCAAGTTGAAGTTAAAAGACTATAAAGATGCAGAGAAATTGTGTACCAAGGTTTTGGAACTTGAGAGTACAAACGTTAAAGCCCTCTATAGAAGGGCCCAAGCATATATGGAGTTGGCTGACTTGGATTTGGCTGAATTTGACATTAAGAAAGCTCTCGAGATTGACCCTGACAATAGGGATGTCAAACTGGAGTACAAGACACTGAAGGAAAAGGTAAAGGAGTATAATAGAAAGGAGGCGAAATTTTATGGAAATATGTTCAACAAGTTGACAAAGATTGGGTCCTGA | 1635 | 0.4263 | MEDFDIPAGEEMDLGEDKVGEEREIGNSGLKKKLVKEGQGFETPEVGDEVQVHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPDLAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIITEGEKWENPKDPDEVLVRYEACLEDGKLVAKSDGVEFTVREGHYCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPAHGDEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAVVKLKLIGKLHNGTVFLKKGHDEEEKLFEFKTDEEQVIDGLDRAVLTMKKDEVALLTIAPEYAFGSSESQQELAVIPPNSTVYFEVELVSFEKEKESWDLNNTQEKLEVASKKKEEGNVLFKAGKYARASKRYEKAVKYIEYDSSFNEEEKKQARTLKVACNLNNAACKLKLKDYKDAEKLCTKVLELESTNVKALYRRAQAYMELADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKVKEYNRKEAKFYGNMFNKLTKIGS* | 545 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr10g0008 | 544 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Apr10g0008 | 544 | Gene3D | Tetratricopeptide repeat domain | 376 | 534 | IPR011990 | GO:0005515 | |
| Apr10g0008 | 544 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 261 | 372 | - | - | |
| Apr10g0008 | 544 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 2 | 259 | - | - | |
| Apr10g0008 | 544 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 372 | 544 | - | - | |
| Apr10g0008 | 544 | Gene3D | - | 23 | 137 | IPR046357 | GO:0003755 | |
| Apr10g0008 | 544 | Gene3D | - | 138 | 252 | IPR046357 | GO:0003755 | |
| Apr10g0008 | 544 | Gene3D | - | 253 | 374 | IPR046357 | GO:0003755 | |
| Apr10g0008 | 544 | Pfam | Tetratricopeptide repeat | 474 | 507 | IPR001440 | GO:0005515 | |
| Apr10g0008 | 544 | SMART | tpr_5 | 391 | 424 | IPR019734 | GO:0005515 | |
| Apr10g0008 | 544 | SMART | tpr_5 | 474 | 507 | IPR019734 | GO:0005515 | |
| Apr10g0008 | 544 | SMART | tpr_5 | 440 | 473 | IPR019734 | GO:0005515 | |
| Apr10g0008 | 544 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 158 | 249 | IPR001179 | GO:0003755 | |
| Apr10g0008 | 544 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 274 | 370 | IPR001179 | GO:0003755 | |
| Apr10g0008 | 544 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 43 | 132 | IPR001179 | GO:0003755 | |
| Apr10g0008 | 544 | ProSiteProfiles | TPR repeat profile. | 474 | 507 | IPR019734 | GO:0005515 | |
| Apr10g0008 | 544 | SUPERFAMILY | FKBP-like | 20 | 140 | - | - | |
| Apr10g0008 | 544 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 280 | 373 | IPR001179 | GO:0003755 | |
| Apr10g0008 | 544 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 47 | 135 | IPR001179 | GO:0003755 | |
| Apr10g0008 | 544 | MobiDBLite | consensus disorder prediction | 11 | 25 | - | - | |
| Apr10g0008 | 544 | SUPERFAMILY | TPR-like | 386 | 538 | IPR011990 | GO:0005515 | |
| Apr10g0008 | 544 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 163 | 252 | IPR001179 | GO:0003755 | |
| Apr10g0008 | 544 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 372 | 544 | - | - | |
| Apr10g0008 | 544 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 2 | 259 | - | - | |
| Apr10g0008 | 544 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 261 | 372 | - | - | |
| Apr10g0008 | 544 | SUPERFAMILY | FKBP-like | 256 | 388 | - | - | |
| Apr10g0008 | 544 | Coils | Coil | 507 | 527 | - | - | |
| Apr10g0008 | 544 | SUPERFAMILY | FKBP-like | 139 | 255 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr10g0008 | Apr-Chr10 | 118531 | 123531 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr10g0008 | 18 | 542 | Calmodulin-binding Proteins | AT3G25230 | 81.905 | 0.0 | 873 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr10g0008 | K09571 | - | gmx:100812632 | 1000.35 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Apr10g0008 | 10 | 118531 | 123531 | Apr10g0008 | 10 | 118531 | 123531 | PCT |