Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3687 ATGGTCACAATCCAAGAGATTCAAGAGCGGCATGACTCACTGATTGATATAGAGCGGAGCCCCAATGAACTTCATCAACTGTTCTTGGACATGGCTGTTTTGGTCCAATCACAAGGTAAGCAACTCAATGACAGAGAGCTACGTGACGAGCGAATTCGTATGTCTGCGGTGGGTCCAGCCGTTCCAGTTTGCAAGGAAGCACCAGAAGAATATCGGAAGTCCACCTTCATTGCCTTCATGATATTGATCATTTTCATATTGATTATTGTCCAGTCACCAAAATAA 285 0.4421 MVTIQEIQERHDSLIDIERSPNELHQLFLDMAVLVQSQGKQLNDRELRDERIRMSAVGPAVPVCKEAPEEYRKSTFIAFMILIIFILIIVQSPK* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3687 94 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 4 44 IPR000727 -
Amo20g3687 94 PANTHER SYNTAXIN 2 91 IPR045242 -
Amo20g3687 94 PANTHER SYNTAXIN-121 2 91 - -
Amo20g3687 94 SUPERFAMILY t-snare proteins 4 43 IPR010989 GO:0016020|GO:0016192
Amo20g3687 94 Pfam Syntaxin 3 39 IPR006011 GO:0016020
Amo20g3687 94 Gene3D - 3 48 - -
Amo20g3687 94 CDD SNARE_syntaxin1-like 3 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3687 Amo-Chr20 147388817 147389101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3687 3 46 SNARE and Associated Proteins AT3G52400 72.727 1.23e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3687 K08486 - gmx:100793347 79.7221