Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3672 GGCTCCAAATCCAAGCACTCACGCACACACATGGAACAAAAAACAGCTACCTCCAACAGCGTCTTAATTGACCCAAGCAACGGTTTCAACCGCGCTACCAGAACATTCCACAGCCTAAAACCCCCTCTCCGCCTCCCTCCTCCACATGCCACCGTCTCCGCACCATCATACGTTCTCTCTCTCCGTCGCAACTCACCTTGGTCCGACTCCGTCACCGCTCTCATCGACTCTGCCACCGGCCGCCACCTCTCCTACGCCGATTTCATCCGCCGTTCAGAAACCCTAGCTGCCAACCTTACATCCCTCTTCAAACTCTCCAAAAACGACACCGCTTTGGTCCTCTCTCCAAACCTCCTCCACGTTCCTATCCTCCACTTCGCGCTCCTCTCCCTCGGCGTCGTTGTTTCGCCGGCAAATCCGCTTGCCACGCGCTCCGATCTCACGCGCATCATCCGCCTTAGCAAACCTACCATCGCATTCGCCACGTCATCAGCGGCTAAGAACCTTCCCAATGAGTTCCGTCACGGGACCGTCCTCATCGACTCGCCCGAGTTCGATTCGCTCATGACAGCGAGTCGACCCGGCGCCAAACTCGAACAAGTGGAGGTGAGTCAGTCTGACGTGGCAGCTATTCTTTACTCTTCAGGAACCACAGGGAAGGTGAAGGGAGTGATGCTGACTCATCGGAACCTGATTGCAATGGCAGGGGTATACAATGTCGTTCGGGCGCAGAGGGAGAAGCCCGCCGTGTTCCTATATACGGTGCCGTTTTTCCACGTGTTCGGGTTTACGCTCTCGCTGAGGGCGGTGGTGCTGTTGGAAACGGTGGTGTTAATGGAGAGATTCGGGTTGAGGAGGATGATGGAGGCGATAGAGAGGTTTCGAGTTACGCACATGGCGGCGGTGCCGTCAGTAATGGTAGCGATGATGAAAGACGACTTGACGGCGGCTTATGATTTAAGGTCGTTGGAATGCGTCGCTTGCGGCGGGGCTCCTCTCGGAAAGGATACCGCCGCGGCGTTCAAAACAAAGTTTCCCAAAGTGTTAATCTTGCAGGGATACGGTCTAACGGAGTCAACGGCAGGGGTTGCCCGAACAACGAATCCGGAGGAGGCAAGCCGATCAAGGACAACAGGTAAGCTGGTGTCAGGTGTTGAGGCTAAAATTGTAAATCCAGACACAGGGGAGCCCATGTTTCCTGGTGATCAAGGGGAACTTTGGCTCAGAGGACCTTCAATTATGAAAGGTTATGTTGGTGACCCAGAAGCAACTTTAGCAAGCTTGGTGAATGGGTGGTTAAGGACTGGGGACCTCTGCTATTTCGATGAAGAGGGTTTCCTCTATGTCGTTGACAGGTTGAAAGAGTTGATCAAATATAAAGGCTACCAGGTGGCCCCTGCAGAATTAGAACAAGTGCTCCATTCGCACCCTGAGATAAGCGATGCGGCAGTTATTCCATATCCTGATGAAGAAGCTGGTCAAGTCCCCATGGCCTTTGTGGTAAGAAAGCCCCAAAGTTCCCTTGGTGAAGCAGAAATAATTGAATTTGTTGCTAAACAGGTTGCACCATACAAGAAAATAAGACGTGTAACATTTGTTGACTCCATACCAAAGAATGCAGTGGGGAAAATTCTAAGGAAAGATTTAAATAAAATTGCCCTTGAAAGACATATCTCTAGGCTATAA 1686 0.5184 GSKSKHSRTHMEQKTATSNSVLIDPSNGFNRATRTFHSLKPPLRLPPPHATVSAPSYVLSLRRNSPWSDSVTALIDSATGRHLSYADFIRRSETLAANLTSLFKLSKNDTALVLSPNLLHVPILHFALLSLGVVVSPANPLATRSDLTRIIRLSKPTIAFATSSAAKNLPNEFRHGTVLIDSPEFDSLMTASRPGAKLEQVEVSQSDVAAILYSSGTTGKVKGVMLTHRNLIAMAGVYNVVRAQREKPAVFLYTVPFFHVFGFTLSLRAVVLLETVVLMERFGLRRMMEAIERFRVTHMAAVPSVMVAMMKDDLTAAYDLRSLECVACGGAPLGKDTAAAFKTKFPKVLILQGYGLTESTAGVARTTNPEEASRSRTTGKLVSGVEAKIVNPDTGEPMFPGDQGELWLRGPSIMKGYVGDPEATLASLVNGWLRTGDLCYFDEEGFLYVVDRLKELIKYKGYQVAPAELEQVLHSHPEISDAAVIPYPDEEAGQVPMAFVVRKPQSSLGEAEIIEFVAKQVAPYKKIRRVTFVDSIPKNAVGKILRKDLNKIALERHISRL* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3672 561 MobiDBLite consensus disorder prediction 1 24 - -
Amo20g3672 561 ProSitePatterns Putative AMP-binding domain signature. 211 222 IPR020845 -
Amo20g3672 561 SUPERFAMILY Acetyl-CoA synthetase-like 70 555 - -
Amo20g3672 561 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 23 553 - -
Amo20g3672 561 Pfam AMP-binding enzyme 71 459 IPR000873 -
Amo20g3672 561 CDD 4CL 55 549 - -
Amo20g3672 561 Gene3D - 455 557 IPR045851 -
Amo20g3672 561 Pfam AMP-binding enzyme C-terminal domain 468 543 IPR025110 -
Amo20g3672 561 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 23 553 - -
Amo20g3672 561 Gene3D - 48 454 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3672 Amo-Chr20 147240375 147246162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3672 15 561 Monolignol Biosynthesis Gene Families AT5G63380 52.500 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3672 - - gmx:100801143 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3049 16 132379085 132379945 Amo20g3672 20 147240375 147246162 PCT
Amo06g2422 06 85490020 85491127 Amo20g3672 20 147240375 147246162 PCT
Amo20g3672 20 147240375 147246162 Amo16g3049 16 132379085 132379945 PCT
Amo20g3672 20 147240375 147246162 Amo06g2422 06 85490020 85491127 PCT