Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3668 AAGTTTTCAAACTGTACTCCAATCCTTCATCAAATTCTGTGCATCATGCTCCTCCAACTTGCTTCAATCACATATTATGTTTTCCTTCTTTCGTCTTTCTTTTTCATCTTCATCCCAACCACCCATGAGCTCCAATCAGATCAGACTCAAGCTTTGTTTCAACTCACGAAATTACTTGAATACCCTTCCTCTTTGCAAGCCTGGCAAAATTACAATGCTGACCTCTGCACCCTTTCTTCATCCCCAAATTTGACCGTTAAATGCGACCATGATTCAGTAACGGAGCTCAAAATCATGGGTGATAAATCTCTCAAGCCATCAACTTTTGATGGATATTCAATTCCCAATCATACACTAAGCCTGAATTTCTCCATTGATTCATTTTTCACCACACTAACAAGGTTAACGAGTTTAAGGGTTCTTAGCTTAGTGTCCTTAGGGTTATGGGGGCCACTACCTGAAATAATTCACCGTTTGTCTTTGCTTGAGGTTTTGGATTTGAGTTCAAATTTCTTGTTTGGTGCTTTACCACCAAAAATATCCACCATGGTAAAGCTTCACACTGTAACACTTGATGGAAATTACTTTAATGCCACTATGCCTGATTGGTTTGGCTCTTTCTCTAATCTAACAATGTTGAGTTTGAAGAGTAATCAATTCAAGGGTCAATTCCCTGTTTCACTTTGCAAAATTGAGACACTTGAAGTTATTTCCATGCCCCACAATGAGTTGTATGGTGAATTGCCTGATTTAACTGCTCTGACTGCTCTACATGTTTTGGATTTAAGGGAAAACAATTTAGATTCTCAACTACCAATCTTCCCCAAATCAGTAGTCACAGTTCTGTTGAGCAATAATTCCTTACATGGAGAGATTCCTAAGCAATTTGGTGAGTTGGTTCATCTTCAGCATTTAGATCTTTCATCAAATTACCTAAGCAGGGTGCCACCACCTTCCTTGTTCTCCTTGCCAAACATTAGTTATTTGAATTTGGCAAACAATGTGTTAAGTGGTTGCATTCTGAGGAAGCTTACTTGTGGCGGCAAGCTCGGCTTTGTGGATATTTCTGGTAACAAGTTAAATGGTGGACTACCTTCTTGCTTGGCCAATACATCTGATAGTAGAGTTGTTAGATATGGTGGAAACTGTTTGTCTATCGACAATGCTGGTTCGCACGCTCAGCGGAGAGGGTCTTATTGCGACGAATCTGGCTTGGGGTGGAAGAAAGTCAAGGCGTGGAAAGTAGCCGTGGTGGTGGCCATGGTCGTTGGACTTGTGATTGTGATTCTTGTGTCTGGAGTTTTCATGTGTAAAAGATGTCATCAGATTCAGAGGAAGATAATTAGGCATGATTTGTTGCCTAAGATTCTCCAAGGAAACTCCACCACAGGGGTTTCCTCTGAAATCCTTGCAAATGCAAGATTCATTTCTCAAACAGTGAAACTTGGATCGCAAACTACTACGACCTGTCGGCAGTTTTCAATAGAAGAGTTGAAGGAAGCTGCAAGAAACTTTGACATGTCAACTTATGTTGGTGAAGGCTCCATAGGGAAGCTTTACAAAGGTAAACTAGAGAACGGATCCCACGTGATGATAAGATCGTTGGCTCTGTCGAAAAAATGCTCAATTCAAAATCTTAAAGCCCGGTTGGATTTGCTCTCAAAGCTTCAACACCCAAATTTGGTTAGCCTTTTGGGTCATTGTATTGAATTCCAGGGACATGATGATTCTAGTTCCAACAAACTTCATCTTGTGTATGAGTATGTGCCAAATGGAAATTATCGGAGCTATTTATCAGAGTTTTCAGCAGGGAAGGCACTTAAGTGGTCTGATAGACTTGCAATTCTAATTGGAGTTGCTAAAGCTGTGCATTTCTTACATACCGGTGTCATCCCTGGTTGTTTCGAAAACCAGCTAAAGACAAAGAATGTTTTGCTTGATGAGCATCACATTCCAAAATTAAGTGACTATGGAATCGCCATCATTCGAGAAGAAATAGACAAGCATGAGGCAAAGGGAGAGAAACTAAAATCATGCCAGAGGACAAAAATGGAGAGTGATGTTTATAATTTTGGGTTCATATTGCTCGAATCACTTGTTGGACCGATAGCAAGCGACAAAGGAGAAACATTCTTTGTAAATGAAAAGGCATCCTTTGGCAGCCAAGATGGTAGAAGAAAGATTGTGGATCCCTTAGTACTGACCACTTGCTCTCAAGAGTCATTGTCAATCGCAATATCTATAACAACGAAATGCATATCGCCGGAATCTTCCTCCCGTCCCTCTTTCGAGGATGTTCTATGGAACTTGCAGTATGCTGCTCAAGTTCAAGCTACTTCAGAGGCGGATCAAAAATCAGATTCAAACATGATAGGTCCAAGTTTGTAG 2388 0.4058 KFSNCTPILHQILCIMLLQLASITYYVFLLSSFFFIFIPTTHELQSDQTQALFQLTKLLEYPSSLQAWQNYNADLCTLSSSPNLTVKCDHDSVTELKIMGDKSLKPSTFDGYSIPNHTLSLNFSIDSFFTTLTRLTSLRVLSLVSLGLWGPLPEIIHRLSLLEVLDLSSNFLFGALPPKISTMVKLHTVTLDGNYFNATMPDWFGSFSNLTMLSLKSNQFKGQFPVSLCKIETLEVISMPHNELYGELPDLTALTALHVLDLRENNLDSQLPIFPKSVVTVLLSNNSLHGEIPKQFGELVHLQHLDLSSNYLSRVPPPSLFSLPNISYLNLANNVLSGCILRKLTCGGKLGFVDISGNKLNGGLPSCLANTSDSRVVRYGGNCLSIDNAGSHAQRRGSYCDESGLGWKKVKAWKVAVVVAMVVGLVIVILVSGVFMCKRCHQIQRKIIRHDLLPKILQGNSTTGVSSEILANARFISQTVKLGSQTTTTCRQFSIEELKEAARNFDMSTYVGEGSIGKLYKGKLENGSHVMIRSLALSKKCSIQNLKARLDLLSKLQHPNLVSLLGHCIEFQGHDDSSSNKLHLVYEYVPNGNYRSYLSEFSAGKALKWSDRLAILIGVAKAVHFLHTGVIPGCFENQLKTKNVLLDEHHIPKLSDYGIAIIREEIDKHEAKGEKLKSCQRTKMESDVYNFGFILLESLVGPIASDKGETFFVNEKASFGSQDGRRKIVDPLVLTTCSQESLSIAISITTKCISPESSSRPSFEDVLWNLQYAAQVQATSEADQKSDSNMIGPSL* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3668 795 Pfam Leucine rich repeat 279 336 IPR001611 GO:0005515
Amo20g3668 795 Pfam Leucine rich repeat 185 244 IPR001611 GO:0005515
Amo20g3668 795 PANTHER OS07G0166700 PROTEIN 25 787 IPR045272 GO:0004714|GO:0006468
Amo20g3668 795 SMART LRR_typ_2 299 323 IPR003591 -
Amo20g3668 795 SMART LRR_typ_2 159 183 IPR003591 -
Amo20g3668 795 SMART LRR_typ_2 254 276 IPR003591 -
Amo20g3668 795 SUPERFAMILY Protein kinase-like (PK-like) 484 774 IPR011009 -
Amo20g3668 795 Gene3D Ribonuclease Inhibitor 277 400 IPR032675 -
Amo20g3668 795 Gene3D Ribonuclease Inhibitor 45 276 IPR032675 -
Amo20g3668 795 ProSiteProfiles Protein kinase domain profile. 505 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3668 795 Gene3D Transferase(Phosphotransferase) domain 1 589 792 - -
Amo20g3668 795 ProSiteProfiles Leucine-rich repeat profile. 301 322 IPR001611 GO:0005515
Amo20g3668 795 PANTHER INACTIVE LRR RECEPTOR-LIKE KINASE 25 787 - -
Amo20g3668 795 Gene3D Phosphorylase Kinase; domain 1 466 588 - -
Amo20g3668 795 SUPERFAMILY L domain-like 132 384 - -
Amo20g3668 795 Pfam Protein tyrosine and serine/threonine kinase 508 767 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3668 Amo-Chr20 147203969 147207355 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3668 34 715 Miscellaneous Gene Families AT5G14210 55.137 0.0 750
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Amo20g3668 PK_Tyr_Ser-Thr 4.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3668 - - gmx:100799183 1110.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3668 20 147203969 147207355 Amo10g3020 10 95910765 95915521 hybridization