Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3647 ATGACTAAAGTGAAAGCAACTAAGCAATCAGGGACAATCATGGACACAATCCAAGAGATTCAAAAGTGGCATGACACAGTGATTGATATAGAGAGCAGCCTCAATGAGCTTCATCAAGTGTTATTGGACATGACTGTTTTGGTCCAATCACAAGGTAAGCAACTCAATGACATAGAGAGCCACGAGTCAAAAGCCAATTCGTACGTCTGCCGCGGGTCCGGCAGTTTCAGTTTGCAAGGAAGCACCAGAAGAATACCGGAAGTCCATCTTCATTGCCATCATAATATTGATTTATTATATTGA 303 0.4191 MTKVKATKQSGTIMDTIQEIQKWHDTVIDIESSLNELHQVLLDMTVLVQSQGKQLNDIESHESKANSYVCRGSGSFSLQGSTRRIPEVHLHCHHNIDLLY* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3647 100 SUPERFAMILY t-snare proteins 10 72 IPR010989 GO:0016020|GO:0016192
Amo20g3647 100 PANTHER SYNTAXIN 11 72 IPR045242 -
Amo20g3647 100 PANTHER T-SNARE-RELATED 11 72 - -
Amo20g3647 100 Pfam Syntaxin 7 52 IPR006011 GO:0016020
Amo20g3647 100 Gene3D - 16 77 - -
Amo20g3647 100 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 17 79 IPR000727 -
Amo20g3647 100 CDD SNARE_syntaxin1-like 16 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3647 Amo-Chr20 146957200 146957669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3647 11 73 SNARE and Associated Proteins AT1G61290 66.667 2.16e-22 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3647 K08486 - ahf:112772691 176.407