Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3631 ATGGAAATTGAATTCCAGCAAGCAAAGCAGTACTCAGTGAAAGATTCCAGCAAGCAAAAAGCAAGAAAAAGAAACAAGAAGAGTAGTAAGTTTGTTGGAGTGAGACAGAGAGCTTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACGCACAACATCAGAATGTGGCTTGGCACTTATCAGACTGCAGAGGAAGCGGCCAGAGCCTACGACGAAGCCGCGCGTCTTCTTCGCGGCTCCGCTGCTCGGACCAACTTCATCACTCATCATTTCTCGTCGTCCTTGGATTCTCCTGTCGCTTCCCGGATTCGGAATCTTTTGAACAGCAAAAAGGGAATCAGCAGCAGTGATGAGATCATTGAGAACTCATCATCATCATCATCGCTTTCGAGTTCGAGTGAGACAATTGGTACAGAAAGCACACCAACAATTCTATCTGATGATAATGCTTATAGACCAGATTTGAGTAGTTTTGAAAGACAAGTATCAGGTTCAGGTTCAGGTTCACCTTATGCAATTCATGGGGTTCATGGATTCATGGATGCTTTTCAAGTTAAGGACTCTAACGAATCTCTCTGGGATCTTCCACCTTTGATGAGCTCGTTTTTCCCTTAA 615 0.4455 MEIEFQQAKQYSVKDSSKQKARKRNKKSSKFVGVRQRASGRWVAEIKDTTHNIRMWLGTYQTAEEAARAYDEAARLLRGSAARTNFITHHFSSSLDSPVASRIRNLLNSKKGISSSDEIIENSSSSSSLSSSSETIGTESTPTILSDDNAYRPDLSSFERQVSGSGSGSPYAIHGVHGFMDAFQVKDSNESLWDLPPLMSSFFP* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3631 204 MobiDBLite consensus disorder prediction 117 147 - -
Amo20g3631 204 MobiDBLite consensus disorder prediction 1 31 - -
Amo20g3631 204 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Amo20g3631 204 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Amo20g3631 204 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Amo20g3631 204 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 9 146 - -
Amo20g3631 204 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Amo20g3631 204 CDD AP2 29 86 IPR001471 GO:0003700|GO:0006355
Amo20g3631 204 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Amo20g3631 204 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Amo20g3631 204 MobiDBLite consensus disorder prediction 117 149 - -
Amo20g3631 204 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Amo20g3631 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 9 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3631 Amo-Chr20 146813675 146814545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3631 16 204 AP2-EREBP Transcription Factor Family AT5G19790 36.000 3.12e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo20g3631 AP2 4.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3631 K09286 - gmx:100796898 157.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2928 16 128331393 128332402 Amo20g3631 20 146813675 146814545 PCT
Amo20g3631 20 146813675 146814545 Amo16g2928 16 128331393 128332402 PCT