Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3620 ATGGATGCGGAAGATCATAATCATGCTTTGGATTTGCCTCCCGGTTTCAGGTTCCACCCTACAGATGAGGAGATCATCTCTTATTATCTCACTCACAAGGTTTTGAACACAAGTTTCACCGCAACTGCCATTGGAGAAGTTGATCTCAATAAGTGTGAGCCTTGGGACTTGCCTCAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTCTGGCAAAGAGATAGAAAGTATCCAACTGGGATCAGAACGAATCGAGCCACGGAATCCGGCTATTGGAAGGCCACCGGAAAAGACAAAGAGATTTACAAAGGGAGAAACCTTGTTGGTATGAAGAAAACCCTTGTGTTCTATAGAGGTAGAGCCCCTAATGGACACAAAACCAATTGGGTTATGCATGAATTCAGATTGGAAGGCCTTTTTGCTACTTACAACCTCCCTATACCTGCTAAGGAGGAATGGGTTGTGTCGAGGGTTTTCCATAAGAACACAACAGAAAAATTGAACCCAACTATTCCATCTGGCCTCTTTAGGATAATGAAGAACATGAACTCAATTGGAGATGATGATCTTGTAGATTTTTCTTCTCTCCCACCTCTCATGGATCCTTCTAATAATTATGATGATGAACACACCACCACCACCAACAACAACTATGTCAATAGTATGTTTGCATCATCATCAGATTATAATATTACTATTCAGCAAAACAAGAAAGATATGATGGGAATAAGGAATAATAATAATAATATTAGAGCATTGTTAATGTACGACGGTCCATCATCATCATCATCAGAAGTAGTTGCTCCTCCTCTCTCTGACTTGGAATTAGGCCTCTGGGATTTATAA 849 0.4052 MDAEDHNHALDLPPGFRFHPTDEEIISYYLTHKVLNTSFTATAIGEVDLNKCEPWDLPQKAKMGEKDWYFFWQRDRKYPTGIRTNRATESGYWKATGKDKEIYKGRNLVGMKKTLVFYRGRAPNGHKTNWVMHEFRLEGLFATYNLPIPAKEEWVVSRVFHKNTTEKLNPTIPSGLFRIMKNMNSIGDDDLVDFSSLPPLMDPSNNYDDEHTTTTNNNYVNSMFASSSDYNITIQQNKKDMMGIRNNNNNIRALLMYDGPSSSSSEVVAPPLSDLELGLWDL* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3620 282 Gene3D NAC domain 21 166 IPR036093 GO:0003677|GO:0006355
Amo20g3620 282 SUPERFAMILY NAC domain 9 163 IPR036093 GO:0003677|GO:0006355
Amo20g3620 282 ProSiteProfiles NAC domain profile. 12 162 IPR003441 GO:0003677|GO:0006355
Amo20g3620 282 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 7 257 - -
Amo20g3620 282 Pfam No apical meristem (NAM) protein 13 137 IPR003441 GO:0003677|GO:0006355
Amo20g3620 282 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3620 Amo-Chr20 146745493 146746909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3620 10 204 NAC Transcription Factor Family AT5G18270 72.362 2.92e-101 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo20g3620 NAM 2.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3620 - - aip:107623055 550.436