Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3615 ATGTTTCCGGCGGTTTTCACTGTTCTTACGCCCTCTAATCTCTCTGCTTTCATCCCAATCAACACAAGACTCTCAATCTTCTCAAAACCAAATTCCAAACTCTCTCTCCTTCCCAGGGTCAGTAGTAACGGTCCTGATTCCACCTCACAACACTCTTCATCCCTTTCAGGTATTGATGCAGTAGAGAGCACGTCTTCTGGCCTTGGTGATGGTTATGTGGCCTTATTTGTCCGTATGTTAGGCCTAGATCATGATCCTCTGGATAGAGAGCAAGCTATAATTGCTCTCTGGAAATATTCACTTGGTGGAAAGAAGTGTATTGACACTATAATGCAATTTCCTGGTTGTATTAATCTTATTGCAAACCTCCTTAGATCAGAGTCTAGTGCAACATGTGAGGCAGCTGCAGGTCTTTTGCGATCAATATCTTCAGTCAATCTATATAGGAATGCTGTAGCAGATAGTGGAGCAGTAGAAGAGATAAATAGATTGTTGAGGCAATTGTCCTTGGCCACTGAGGTGAAGGAGCAGAGTATGGGTACACTCTGGAATTTATCTGTTGATGAGAATCTCTGCAGGAGAATGGCAAAGAGTGACATTCTACCATTATCTATTAAATACCTTGATGATGAGGATATGAAAGTAAAGGAAGCTGCAGGAGGCATTTTGGCAAATTTAGCATTGAACCGCAATAATCATGACGCGATGGTTGAATCAGGTGTTATACCAAAATTGGCAAAGTTCTTAATATCTAATTCAGAAGGTTCTAAAGTTATTAAAAAGGAAGCAAGAAATGCATTGTTGGAACTTGTTAAGGATGATGATTATTATAGAATTCTTGTTATTGAAGAAGGACTGGTTCCTGTGCCATTAATTGGTGCTGCAGCATATAAATCATTCACCCCACGATTACATGCGTGGCCCACACTACCAGATGGAACTGAAATTGAAAAGACTCCTGGACGAAATTCCAAATTTGGTGCATCAGAATTACTTCTTGGATTAAATATTGATGACAAGAATGCTAACATAGATGAAGCAAAAGTCAATGCAATCATTGGACGGACACAACAGCAATTCCTTGCTCGTATTGGGGCTATAGAAATGGAAGAGAAGACGGTATCTGAATGTTCAAATGATCAGCTGCTTACACTTTTGCCTTGGATGGATGGTGTTGCTCGTTTGGTGCTGATATTAGAACTTGAAGATAAGTCTGCAATTGTAAGGTCTGCTGAGTCAATTGCTGGTGCATGTATCAATGAACATATGCGCATTGCATTTAAGGAGGCTGGAGCAATTAAACATTTAGTACGTCTTTTGAATTGTGATCATAATGAGGTCCAATTTGCTGCAATACAAGCTTTGGAAAGGCTGTCTGCTAGCAATATTGTTTGCCGGATGATTGAAGCTGAGGGTGTTTTACATCCTTTAATCAGTATTTTAAAGTCCTCAGAAATAGCTGAACCTGTTGTGGAGAAGGCTCTGAACATAGTCGCTCAGATACTAGACCCCAGTAAAGAGATGCATTTGAAGTTTTATGACGGACCAGTTAATGGATCTGAGAAGATGTTTGACACAGCGAAAAGTGAAATTCCAGCTGGGTTAAGAACTGAACAAGCCATATCAGAAACAAACTCCAGGAATGCTATACTGGAATCTGATTTCATTGCACGTCTTGTTGAGATTCTGAAGTCCTCTTCACCCAGTTTACAAGAAAAAGCTGCATCTGTGCTCGAGTTTGTTGCACTAGCTGACCAAACGTTGGCCTCTGTTATTTCTGCAGATATTGAATCTGGTCTCAACTCTGTTTTTCAGCAAAAGCTTCTGAAAATTTCAGCGGACATGGAATCTGATGTTGAAGAGCAATTTTCAGAAGCATACACAATTGAATTCGAAGAAGCCGGTCGTGCCATATCTGCAGCATCCCGGCTGATGACAAGACTACTCGATAATGAGCAGTTCCGGCACAAAACAGATTCCTCCCATTTCATCGGCTTGCTTCGTGAAATACTCCGGTCGAGGATCCCTCTCTATCACAAAGATTGGGTAGCTGCTTGCCTTGTCAAACTTAATTTTCTCTCTAGTTCCAACACTTCTTCTGATCCAATCAATGTGGAAGTTACACTTTATGAGACAATTCCGAGGCTTCTGGAACAGATTAAAAATTCGTTTTCTCGAGAAACACAGGAAAATGCTGTAGTGGAACTCAACAGAATAGTGTCTGAAGGAGTGGTGGATTCCAGTGGAGCTATTATTTCTGAGGGAGCGATTTATCCATTGGTGAAGCTGATTGAAGAAGGGAGTGAAAAGGCAGTTGAGGCAAGCTTGGCAATACTGTACAATCTGAGTATGGACAGCGACAACCATTCGGCAATCGTGGTGGCCGGAGCAGTCCCGGCCTTGAGACGAATTATTCTGGCTCAGAGACCGCATTGGGAACGAGCCCTTCGTCTGCTTAGAAATTTGCCAACATGA 2475 0.4162 MFPAVFTVLTPSNLSAFIPINTRLSIFSKPNSKLSLLPRVSSNGPDSTSQHSSSLSGIDAVESTSSGLGDGYVALFVRMLGLDHDPLDREQAIIALWKYSLGGKKCIDTIMQFPGCINLIANLLRSESSATCEAAAGLLRSISSVNLYRNAVADSGAVEEINRLLRQLSLATEVKEQSMGTLWNLSVDENLCRRMAKSDILPLSIKYLDDEDMKVKEAAGGILANLALNRNNHDAMVESGVIPKLAKFLISNSEGSKVIKKEARNALLELVKDDDYYRILVIEEGLVPVPLIGAAAYKSFTPRLHAWPTLPDGTEIEKTPGRNSKFGASELLLGLNIDDKNANIDEAKVNAIIGRTQQQFLARIGAIEMEEKTVSECSNDQLLTLLPWMDGVARLVLILELEDKSAIVRSAESIAGACINEHMRIAFKEAGAIKHLVRLLNCDHNEVQFAAIQALERLSASNIVCRMIEAEGVLHPLISILKSSEIAEPVVEKALNIVAQILDPSKEMHLKFYDGPVNGSEKMFDTAKSEIPAGLRTEQAISETNSRNAILESDFIARLVEILKSSSPSLQEKAASVLEFVALADQTLASVISADIESGLNSVFQQKLLKISADMESDVEEQFSEAYTIEFEEAGRAISAASRLMTRLLDNEQFRHKTDSSHFIGLLREILRSRIPLYHKDWVAACLVKLNFLSSSNTSSDPINVEVTLYETIPRLLEQIKNSFSRETQENAVVELNRIVSEGVVDSSGAIISEGAIYPLVKLIEEGSEKAVEASLAILYNLSMDSDNHSAIVVAGAVPALRRIILAQRPHWERALRLLRNLPT* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3615 824 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 199 241 IPR000225 GO:0005515
Amo20g3615 824 Gene3D - 67 308 IPR011989 -
Amo20g3615 824 Gene3D - 631 824 IPR011989 -
Amo20g3615 824 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 755 797 IPR000225 GO:0005515
Amo20g3615 824 SUPERFAMILY ARM repeat 75 503 IPR016024 -
Amo20g3615 824 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 462 IPR000225 GO:0005515
Amo20g3615 824 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 156 189 IPR000225 GO:0005515
Amo20g3615 824 SMART arm_5 420 460 IPR000225 GO:0005515
Amo20g3615 824 SMART arm_5 103 144 IPR000225 GO:0005515
Amo20g3615 824 SMART arm_5 229 272 IPR000225 GO:0005515
Amo20g3615 824 SMART arm_5 188 228 IPR000225 GO:0005515
Amo20g3615 824 SMART arm_5 785 824 IPR000225 GO:0005515
Amo20g3615 824 SMART arm_5 744 784 IPR000225 GO:0005515
Amo20g3615 824 SMART arm_5 145 187 IPR000225 GO:0005515
Amo20g3615 824 SMART arm_5 461 503 IPR000225 GO:0005515
Amo20g3615 824 SMART arm_5 542 583 IPR000225 GO:0005515
Amo20g3615 824 SMART arm_5 699 741 IPR000225 GO:0005515
Amo20g3615 824 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 24 824 - -
Amo20g3615 824 Pfam Armadillo/beta-catenin-like repeat 420 460 IPR000225 GO:0005515
Amo20g3615 824 SUPERFAMILY ARM repeat 394 810 IPR016024 -
Amo20g3615 824 Gene3D - 377 600 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3615 115 303 U-box Gene Family AT2G23140 30.396 3.98e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3615 - - lang:109360684 1168.3