Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo20g3608 | ATGGACAGTATCTTGGGTCTCCTCAAACTTAGGATTAAGAAAGGCATTAATCTCGCAGTTCGAGATACTTCTTCTAGTGACCCTTATGTTGTTGCCAACATAGGGGAACAGAAGCTCAAAACTAAGGTCATCAAAGACAACTGTAATCCAGAGTGGAATGAAGAACTGATTCTTTCTATTAAGGATATTAATACTCCAATAAATTTGACGATTTACGACAAAGACACCTTATCGTCGGACGACAAAATGGGTGAGGCGATTATAGAACTGAGGCCTTATCTTCAGTGCTTGGTGATGGGGTTGGAGAGGCTTCCAGATGGGTGCGTGGTGAAGAGGATTCAGCCAAACAGGGTTAACTGCCTTGCTGAAGAGAGCTCTTGCATTTGGCAAGATGGGACTATAATCCAAGAGATGATCTTGAGATTGAAAAATGTTGAGTGTGGTGAACTTGTTTGTGAAATGGAGTGGGTTGATGTACCTGGTTGTAAGGGTTTATCAGAGCTACGACCTTAA | 513 | 0.4211 | MDSILGLLKLRIKKGINLAVRDTSSSDPYVVANIGEQKLKTKVIKDNCNPEWNEELILSIKDINTPINLTIYDKDTLSSDDKMGEAIIELRPYLQCLVMGLERLPDGCVVKRIQPNRVNCLAEESSCIWQDGTIIQEMILRLKNVECGELVCEMEWVDVPGCKGLSELRP* | 171 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo20g3608 | 170 | CDD | C2_ArfGAP | 5 | 148 | - | - | |
| Amo20g3608 | 170 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 3 | 157 | IPR035892 | - | |
| Amo20g3608 | 170 | Pfam | C2 domain | 7 | 92 | IPR000008 | - | |
| Amo20g3608 | 170 | ProSiteProfiles | C2 domain profile. | 1 | 109 | IPR000008 | - | |
| Amo20g3608 | 170 | SMART | C2_3c | 7 | 102 | IPR000008 | - | |
| Amo20g3608 | 170 | Gene3D | C2 domain | 4 | 162 | IPR035892 | - | |
| Amo20g3608 | 170 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 10 | 1 | 163 | - | - | |
| Amo20g3608 | 170 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 163 | IPR044562 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo20g3608 | Amo-Chr20 | 146626070 | 146628741 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo20g3608 | 38 | 166 | C2H2 Transcription Factor Family | AT1G70790 | 63.359 | 2.03e-58 | 177 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo20g3608 | - | - | gmx:100788395 | 258.07 |