Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3598 ATGGATCAAAGTGGTGGAATTGCGACTGGGCCGCGCGATGTCCTTGGAGTTAGGAACGGTTCCGACATTGGGTGTAAACCCTTAAAGAATTTGAATGGTAAAATCTGTCAGATGTGTGGCGATACTGTTGGATTAACAGCCACCGGTGATGTTTTTGTTGCTTGCCAAGAATGTTCCTTCCCACTTTGTCACCGTTGCTATGAATGTGAGTGCGAGAATGGGAACCAATCTTGCCCCCAGTGCAAGACCAGATACAATAGTCACAAAGATAGTTCCCATTTGGAGGGAGATGAGGATGATGATGAAGATGATGATGATGTTGATGATATAGAGAATGAGGTAAATTATGGAGAAGGAAACATTAACAAAGCAGGGATGCAATGGGAAGAAGATGCTGACCTCTCTTCTTCGTCGGGACATGATTCTCGGATGCCAAACTCAAATCTCCATATCACAAATGGGCAGCCGCTATCTAGTGAAAAACCGTGTGCTACTCCTGATACAAAATCTGTTCAAGCTACATCTGGTCCTTTGGGTCCATCCAAGGCTCACTCACTTTCCTACACCGATTCAAAACAGCCAGGTCTTGAGAGTGATGAAGAGGTCAGAAGAGTGCCAGAGATCGGAGGTGAATCTGCTGGACCTTCAGCTTCCCGTCCAGGCGCCGGTCCAACTGGTGGGCAAGAACGTGGTCAGGGGACTGGGGATGGTCAACGGAAGAGAGGCAGAAGCCCGGCAGACAAAGAAAACAAACGGCTAAAGAGGCTACTGAGGAACAGAGTGTCAGCTCAACAAGCAAGGGAGAGGAAAAAGGCATATTTGATCGATTTGGAAACCAGAGTCAAAGACTTGGAGAAGAAGAACTCAGAGCTCAAAGAGAGGCTTTCCACTTTGCAGAATGAGAACCAAATGCTAAGACAAATATTAAAGAATACAACAGCTAGCAGGAGAGGGAGCAACAGTGGTACAAATGCTGAATAA 981 0.4638 MDQSGGIATGPRDVLGVRNGSDIGCKPLKNLNGKICQMCGDTVGLTATGDVFVACQECSFPLCHRCYECECENGNQSCPQCKTRYNSHKDSSHLEGDEDDDEDDDDVDDIENEVNYGEGNINKAGMQWEEDADLSSSSGHDSRMPNSNLHITNGQPLSSEKPCATPDTKSVQATSGPLGPSKAHSLSYTDSKQPGLESDEEVRRVPEIGGESAGPSASRPGAGPTGGQERGQGTGDGQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNAE* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3598 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 109 IPR013083 -
Amo20g3598 326 Pfam Zinc-binding RING-finger 26 102 IPR027934 -
Amo20g3598 326 MobiDBLite consensus disorder prediction 89 271 - -
Amo20g3598 326 CDD bZIP_HY5-like 252 303 - -
Amo20g3598 326 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 249 312 IPR004827 GO:0003700|GO:0006355
Amo20g3598 326 SMART brlzneu 247 311 IPR004827 GO:0003700|GO:0006355
Amo20g3598 326 MobiDBLite consensus disorder prediction 138 193 - -
Amo20g3598 326 Pfam bZIP transcription factor 248 309 IPR004827 GO:0003700|GO:0006355
Amo20g3598 326 Coils Coil 246 315 - -
Amo20g3598 326 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 161 317 - -
Amo20g3598 326 MobiDBLite consensus disorder prediction 96 113 - -
Amo20g3598 326 Gene3D Single helix bin 270 311 - -
Amo20g3598 326 MobiDBLite consensus disorder prediction 234 271 - -
Amo20g3598 326 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 254 269 IPR004827 GO:0003700|GO:0006355
Amo20g3598 326 SUPERFAMILY Leucine zipper domain 251 309 IPR046347 GO:0003700|GO:0006355
Amo20g3598 326 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 161 317 IPR044280 GO:0000981|GO:0045944
Amo20g3598 326 SUPERFAMILY RING/U-box 22 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3598 Amo-Chr20 146549675 146557614 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3598 195 308 bZIP Transcription Factor Family AT5G11260 74.783 5.78e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo20g3598 zf-UDP 1.1e-33 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3598 K10999 - aprc:113855639 467.233