Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3595 ATGGCTATGTTCTTCACGGAGTTGTATTCTTCTGAAACTCGTAAACTAATTGAACGACTCGTTAATTATATTATTTACAAGGGGACATTTCTACCACTGATTGTGCCACCGACAGTATATCAGGCTGGTCTTTGGTCAACATGGCTGACTGTGCTCTGTTCTTTAAAGATGTTTCAAGCTTTGGCTAGAGATCGTTTGGAGCGGCTGAATGCATCTCCATCTGTGACACCTTGGACATATCTTCGTGTATATTCAGCATTGTTATTCGTTTTCTTCATTGATGTTTTCTGGATAAGGTTTTGTGTGTCAGTATATAGAAGCGATCCGTCCTCTCTGCATCTGTTACTATTCTTTGAGCCATTAAGTATTGCTTTTGAGACCCTACAGGCCATTTTGGTGCATGGATTTCAGTTCCTTGACATATGGCTTCCTCATTCAGCTTGCAACAGCAGTGATTGCCAAATGCCTAAACTGTTTAATACACTAACAGCAGGTGTCTTACTGGAATGGAAGGGAACTCTTATTCGGAACTTCGGGTTTTTCCTCGATATGGCAACATTTTTAATGGCACTTGGCCATTACCTGTACATATGGCGTCTTCATGGGATGGCTTTTCATCTAGTAGACGCAGTGTTGTTCCTAAACATACGGGCATTGCTTGGTGCAATTATAAATCGTATTAAAAGCTTTCATAGGTTAAGGATAGCTCTAGGAGCACTTAATGCTGCTCTTCCTGATGCGACAGATGCGGAGTTAAGAGCATACGATGATGAATGCGCTATTTGTAGAGAATCCATGGCTAAGGCAAAAAGGTTAAACTGCAATCACCTTTTCCATCTTGCATGTTTGAGATCCTGGTTGGATCAAGGCCTGACTGAAATGTATACTTGTCCCACATGCCGAAAGCCTCTTTTTCCGGGCCGGTCAGAAAATGAAACAAGCTCCAATGTTGGGGGAATATCTAGTGACGAGCAACTGGTACGCAATACAAATGCAGGACTGGATCGGCAAAACTCTGCTAGAAATACCATGCCTGCAGTATTGTATCCCAATCATATACCAAACTCGGCAGACAATGTCCCTTGGAGGGGTGCAGGACTGGACTCAGGCTGGTTGCATTCTTGGCCAAATCAGGGTATTGATGGAGCTGGTCCATCATCTACAACAATCAGAACGGTTGGATTAGGAAGAGTTCAAATGATGATGAGGCAGCTAACATCTGTGGGAGAAACCTATGCCCAGGGTGCCTTTGAAGATGCTTCCTGGAGCCTCTGGCCTATTAATCCCTCCCAGGCTTCTTCTAGTAATCCTACCGTTTCTGTAGGTGAGAGGCCGTCAGGAGGATCAGGTAGCTTACATAGAAGAACTGGTTCGCAATCTGCAAATGATAATATGGCTAATATTCTTGCTATGGCCGAAACTGTTCGGGAGGTTTTACCTCATATTCCAGATGACATAATATTCCAGGACTTGCAGAGAACAAACTCTGTCACAGTTACTGTGAATAATCTTCTTCAAATGTAA 1524 0.4318 MAMFFTELYSSETRKLIERLVNYIIYKGTFLPLIVPPTVYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSVTPWTYLRVYSALLFVFFIDVFWIRFCVSVYRSDPSSLHLLLFFEPLSIAFETLQAILVHGFQFLDIWLPHSACNSSDCQMPKLFNTLTAGVLLEWKGTLIRNFGFFLDMATFLMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLGAIINRIKSFHRLRIALGALNAALPDATDAELRAYDDECAICRESMAKAKRLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFPGRSENETSSNVGGISSDEQLVRNTNAGLDRQNSARNTMPAVLYPNHIPNSADNVPWRGAGLDSGWLHSWPNQGIDGAGPSSTTIRTVGLGRVQMMMRQLTSVGETYAQGAFEDASWSLWPINPSQASSSNPTVSVGERPSGGSGSLHRRTGSQSANDNMANILAMAETVREVLPHIPDDIIFQDLQRTNSVTVTVNNLLQM* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3595 507 ProSiteProfiles Zinc finger RING-type profile. 259 301 IPR001841 -
Amo20g3595 507 MobiDBLite consensus disorder prediction 428 461 - -
Amo20g3595 507 SUPERFAMILY RING/U-box 248 307 - -
Amo20g3595 507 Pfam Ring finger domain 257 301 IPR001841 -
Amo20g3595 507 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIN3 5 507 - -
Amo20g3595 507 CDD CUE_RIN3_plant 468 505 IPR035667 -
Amo20g3595 507 SMART ring_2 259 300 IPR001841 -
Amo20g3595 507 Pfam CUE domain 471 507 IPR003892 GO:0043130
Amo20g3595 507 Gene3D - 466 506 - -
Amo20g3595 507 ProSiteProfiles CUE domain profile. 467 507 IPR003892 GO:0043130
Amo20g3595 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 309 IPR013083 -
Amo20g3595 507 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 5 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3595 Amo-Chr20 146519481 146526784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3595 14 318 C3H Transcription Factor Family AT3G16090 28.707 1.03e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3595 K10636 - gmx:100819656 832.787