Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3583 ATGGATATAGACCTTAGGTTACCTTCTGGTGAACATGATAAAGAGGATGAAGAAACAGCTACAATTGATAACATATTGGATGGTGAAGAAAAATTGAATAATGGAGCTATGGAGGGGAGAAATATGGTTGATCCTGGTATGGAGTTACAAGCTCTAAATGGTGGTGATTTGAATTCGCCCACACTTGATATGGTAATATTCAAGGAAGATACTAATCTTGAGCCACTTTCTGGCATGGAATTTGAGTCTCATGGGGAGGCTTATTCATTCTACCAAGAATATGCTCGTTCAATGGGATTCAACACTGCAATACAGAATAGCCGACGCTCCAAAACATCAAGAGAATTCATAGACGCAAAGTTTGCTTGTTCTAGGTACGGAACAAAACGAGAATATGACAAATCGTTCAATCGACCACGTGCAAGACAGAGCAAGCCAGATTCTGAAAATTCAACCGGTCGAAGATCTTGTTCCAAGACTGACTGTAAAGCAAGTATGCACGTGAAAAGAAAACATGATGGAAAATGGGTTATACACAGTTTTGTGAAGGAGCATAATCATGAGCTTTTACCAGCCCAAGCAGTCAGTGAACAAACAAGAAGAATGTATGCTGCAATGGCCAGACAGTTTGCTGAATACAAGACTGTGGTTGGTCTCAAGAATGAAAAGAATCCATTTGATAAAGGACGGAATTTGAGCCTTGAATCAGGAGACGCTAAACTCATGCTGGATTTTTTTGTACAGATGCAAAATATGAACTCTAACTTCTTTTATGCAGTTGATATTGATGATGATCAAAGACTGAAAAATATTCTATGGATTGATGCTAAAAGTAGGCATGACTATACCAACTTTTGTGATGTAGTGTCATTTGATACCACTTATGTTAGAAACAAATATAAGATGCCTCTTGCACTTTTTGTTGGAGTGAACCAGCACTATCAATTTATACTACTGGGGTGTGCCTTAATATCAGATGAAAGTCCCGCAACTTTTTCTTGGCTGATGCGGATGTGGCTGAAAGGAGTTGGTGGTCAAGTTCCAAAAGTGATGATTACTGAACATGACAAGACTTTGAAGTCAGTTATTGCAGATATATTCCCTAGTGCTTGTCATTGTGTCTCTTTATGGCATATTGTGGGTAAGATATCTGAAAATATGGCTCATGTAATTAAAAAACATGAGAAGTTTTTGGCAAAATTTGAAAAATGCATATACAGGTCATTGACCAGTGATGACTTTGAGAAGAGATGGTGGAAAATTGTTGATAGGTTTGAACTTCGAGAGGATGAATGCATGCAGTCACTATATGAAGATCGTAAGTTGTGGGCACCAACATTCATGAGGGATGTTTTCTTAGGTGGTATGTCTACTGTCCAACGATCGGAAAGTGTAAATTATTACTTTGACAAATATGTTCACAAGAAGACCTCTGTGCAAGATTTTGTTAAATTGTATGAAGCAATCTTGCAAGACAGGTACGAAGAGGAAGCCAAAGCAGATTCTGATACCTGGAATAAAGTAGCAACATTGAAAACACCTTCACCGTTGGAGAAGAGTGTCGCAGGGGTTTACACGCATGCTGTATTCAAGAAGATTCAAGCTGAGGTTGTTGGTGCAGTTGCTTGTCATCCTAAAGCTGACAGACAAGATGAGACCACTATTATTCATAGGGTTCACGACATGCAATCAAATAAGGACTTCTTTGTTGTGGTGAATCAAGTAAAATCAGAATGGTCTTGTATATGTCGTTTATTTGAATATAGAGGCTATCTTTGTCGACACATATTGATTGTTCTGCAATATTCTGGCCATTCTGCAATCCCATCCCATTATATTTTGAAACGCTGGACCAAAGACGCAAAGGTCCGGAATATAATGGGAGAAGAGTCTGAACATATGCTGGCAAGGGTGCAACGATACAATGATTTATGTCAGCGAGCATTTAAACTGAGTGAAGAGGGATCTCTTTCACAAGAGAGTTACAGTATTGCAGTCCATGCACTGCACGAAGCACAAAAAAGTTGTGTGAGCGTTAATAATTCTGGCAAGAGTCCCATGGAAGTTGGTACATCAGTCACTCATGCTCAGCTTTCTACTGAAGAAGATACCCAAAGTAGAAATATGGGCAAATCAAACAAAAAGAAAAATCCAGCTAAAAAGAAAAAGGTGAATGCCGAGGCTGAAGTGTTGACTGTTGGAGCAATTGACAACATGCAACAAATGGTTTGTCCTCCCGCTGACAAGTTCAGCACAAGAGCTGCAGTAACCCTTGATGGCTATTACGGCACACAACAACAGGTGCAGGGAATGTTGAACTTAATGGGACCGCGAGATGATTTTTACGGGAATCAGCAGACTCTTCAGGGACTGGGACCAATAAGTTCAATACCAACAAGTCACGACGGTTATTATAGTGCGCACCAGGGCATGCCAAATCTGGCACAATTGGATTTTTTGCGAACAGGTTTCACATATGGCATCCGGGATGATCCGAATGTAAGAGCAGCGCAGTTGCATGAGGATCCGTCGAGGCATGCATGA 2544 0.4017 MDIDLRLPSGEHDKEDEETATIDNILDGEEKLNNGAMEGRNMVDPGMELQALNGGDLNSPTLDMVIFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQSKPDSENSTGRRSCSKTDCKASMHVKRKHDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVVGLKNEKNPFDKGRNLSLESGDAKLMLDFFVQMQNMNSNFFYAVDIDDDQRLKNILWIDAKSRHDYTNFCDVVSFDTTYVRNKYKMPLALFVGVNQHYQFILLGCALISDESPATFSWLMRMWLKGVGGQVPKVMITEHDKTLKSVIADIFPSACHCVSLWHIVGKISENMAHVIKKHEKFLAKFEKCIYRSLTSDDFEKRWWKIVDRFELREDECMQSLYEDRKLWAPTFMRDVFLGGMSTVQRSESVNYYFDKYVHKKTSVQDFVKLYEAILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGVYTHAVFKKIQAEVVGAVACHPKADRQDETTIIHRVHDMQSNKDFFVVVNQVKSEWSCICRLFEYRGYLCRHILIVLQYSGHSAIPSHYILKRWTKDAKVRNIMGEESEHMLARVQRYNDLCQRAFKLSEEGSLSQESYSIAVHALHEAQKSCVSVNNSGKSPMEVGTSVTHAQLSTEEDTQSRNMGKSNKKKNPAKKKKVNAEAEVLTVGAIDNMQQMVCPPADKFSTRAAVTLDGYYGTQQQVQGMLNLMGPRDDFYGNQQTLQGLGPISSIPTSHDGYYSAHQGMPNLAQLDFLRTGFTYGIRDDPNVRAAQLHEDPSRHA* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3583 847 MobiDBLite consensus disorder prediction 686 706 - -
Amo20g3583 847 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 48 765 IPR031052 GO:0006355
Amo20g3583 847 MobiDBLite consensus disorder prediction 132 164 - -
Amo20g3583 847 Pfam MULE transposase domain 288 380 IPR018289 -
Amo20g3583 847 Pfam SWIM zinc finger 575 602 IPR007527 GO:0008270
Amo20g3583 847 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 48 765 - -
Amo20g3583 847 MobiDBLite consensus disorder prediction 686 723 - -
Amo20g3583 847 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Amo20g3583 847 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Amo20g3583 847 SMART 26again6 579 606 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3583 Amo-Chr20 146325585 146331871 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo20g3583 FAR1 1.2e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3583 - - gmx:100817034 1511.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3583 20 146325585 146331871 Amo20g3583 20 146325585 146331871 ECH