Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3582 ATGTCATTTTTATCTATATCTTTATTTCTTTCTATTTTCTTCTTCCTTTTGTTCTTCACACCATCTTCTTCTTTATCTTTGTCGTCTTTTCCTTCTTCGTCTTCTTCTTCTATTGCGTGCAAGTCGACATTATATCCTAAACTATGTCGTACCCTTCTCTCCACAATTCGAAACTCTCCTTCTGATCCGTACGGTTACGGCAAGTTTTCTATCAAACAAAGTCTCAAACAGGCCACAAAACTCAAAAAAGTCTTCAACGACTTTCTAAACCGCCACAATCGCCAGTCCAATAATAATTCTTCCTCTCTAAACAATGCTGAGGTCTCTACAATCGTCGACTGCAGAGACCTCAACAAGCTCAACGTGGACTATCTTTCGTCCATATCCGCTGAGCTAAAAAATTCTAATAACAATGATTATTATTATTCCAACGGCGCCGCAGAGCTCGTCGACAAGATCGAGAGCTATCTCAGCGCCGTGGCCACCAATCACGAGACATGCTACGATGGGTTGGTGGCCACGAAAGGTGGGATAGGTAACGCGCTCGCGGCATCGTTGAAGGGTGCCACAGAATTATACAGTGTGTCGCTTGGGTTGGTGAGTGTGGCTCTTGATAGGAACATGAAGAAGAATAATAATAAGACCCGCAAACATGGCCTTCCAACCAAGAACTTTATGGTTAGGGAGCCACTTGAGAAACTCATTAAGCTTCTTCGAACAAAGTATAGTTGCAAGAAGAATTCAAATTGTAGCAGAAGCGAAAGGATTCTAAAAGAAAGCAAAAGCCAAGGGATTCTATTGAAAGATTTTGTGATAGTGAGCCATTATGAAGGGAGTGATAACTACAGTTCAATTGGAGAAGCCATTGCTGCTGCACCAAATAACACAAGGCCAGAAGATGGGTATTTTGTTGTGTATGTTAGAGAAGGGTATTATGAAGAATATGTTGTTGTTCCAAAAGAAAAGAAGAACATTTTGCTCATTGGAGATGGTATCAACAACACTATTATCACTGGCAATCATAGTTTCATTGATGGTTGGAGTACTTTCAATTCTTCTACCTTTGCTGTTAGCGGAGAAAGATTTATTGCGGTGGACATTACTTTCAGAAACACCGCCGGACCGGAAAAACACCAAGCCGTGGCTGTGCGAAACAACGCCGACCTCTCCACATTCTACCGTTGCAGCTTCGAAGGCTACCAAGACACGCTCTACGTCCACTCTCTCCGACAATTCTACCGAGAATGCCACATTTACGGCACCGTTGACTTTATCTTCGGCAACGCCGCCGTAGTCTTCCAAAGCTGCAACATCTACGCCAGAAATCCGATGGCCAATCAAAAGAATGCTGTGACTGCTCAGGGAAGAAACGATCCTAACATGAACACCGGAATCTCGATCCATAACTGCAGCATTAGTGCTGCACCGGACTTGAATACTTCGTCCACCATGACCTACTTAGGTAGGCCATGGAAGGAGTATTCGAGAACGGTGTATTTGCAGTCTTATATTGGTGATCTCATAGAACCTTCTGGATGGTTGGAATGGAATGGAACAATTGGGTTGGATACTCTCTTTTATGGAGAATTCAATAATTATGGACCTGGTTCTAACACTAGTAATAGAGTTCATTGGCCTGGTTATGTGCTTTTGAATGCTACACAAGCTTCTAATTTTACTGTTCTTAATTTCACTTTGGGGAATACATGGCTTCCAGATACAGATATACCCTATACTGAAGGCTTGTTGAATTAG 1755 0.4239 MSFLSISLFLSIFFFLLFFTPSSSLSLSSFPSSSSSSIACKSTLYPKLCRTLLSTIRNSPSDPYGYGKFSIKQSLKQATKLKKVFNDFLNRHNRQSNNNSSSLNNAEVSTIVDCRDLNKLNVDYLSSISAELKNSNNNDYYYSNGAAELVDKIESYLSAVATNHETCYDGLVATKGGIGNALAASLKGATELYSVSLGLVSVALDRNMKKNNNKTRKHGLPTKNFMVREPLEKLIKLLRTKYSCKKNSNCSRSERILKESKSQGILLKDFVIVSHYEGSDNYSSIGEAIAAAPNNTRPEDGYFVVYVREGYYEEYVVVPKEKKNILLIGDGINNTIITGNHSFIDGWSTFNSSTFAVSGERFIAVDITFRNTAGPEKHQAVAVRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECHIYGTVDFIFGNAAVVFQSCNIYARNPMANQKNAVTAQGRNDPNMNTGISIHNCSISAAPDLNTSSTMTYLGRPWKEYSRTVYLQSYIGDLIEPSGWLEWNGTIGLDTLFYGEFNNYGPGSNTSNRVHWPGYVLLNATQASNFTVLNFTLGNTWLPDTDIPYTEGLLN* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3582 584 PANTHER PECTINESTERASE 19 582 - -
Amo20g3582 584 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 195 IPR006501 GO:0004857
Amo20g3582 584 Pfam Plant invertase/pectin methylesterase inhibitor 39 198 IPR006501 GO:0004857
Amo20g3582 584 ProSitePatterns Pectinesterase signature 2. 418 427 IPR033131 -
Amo20g3582 584 CDD PMEI-like_3 39 201 - -
Amo20g3582 584 Gene3D - 271 584 IPR012334 -
Amo20g3582 584 Pfam Pectinesterase 275 567 IPR000070 GO:0030599|GO:0042545
Amo20g3582 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 203 IPR035513 -
Amo20g3582 584 SUPERFAMILY Pectin lyase-like 270 581 IPR011050 -
Amo20g3582 584 PANTHER PECTINESTERASE 19 582 - -
Amo20g3582 584 SMART PMEI_2 31 199 IPR006501 GO:0004857
Amo20g3582 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 202 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3582 Amo-Chr20 146316186 146323775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3582 39 584 Carbohydrate Esterase AT3G10720 59.710 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3582 K01051 - gmx:100816503 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3582 20 146316186 146323775 Amo20g3582 20 146316186 146323775 ECH