Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3581 ATGTCTTCATTCAAATCATACGGCAAAGTTGATGAACATGACCAAATGCTACACCAAACCCAAATAAAAACCCGAAAGAGAATCATAATCATAAGCCTCTCCTCAATAATCCTCGTTGCTGTTGTCCTTGCTGCTGTTTTTGGAATTCTCAATAATTCTCGTGATCATAACTCACAACAAGATGGCGGTTCAGTGCTGGCGACGTCGGTGAAGGCGATTTGCGACGTGACATTGTACAAGGAATCATGTTACAGTAGTCTGAGCTCTGTTGTGAACTCATCAGCAGGGGAGGTTAAGCCAGAGGAGCTATTAAGGTTGTCCATTAAGGTGGCCTTAGAAGAAGTCTCAAATGTTGTTAATAGGTTTTTCTCTTCTGATAGTGGGGGGCATAATGGACATTTCCAAGGCTTAAATAATGATGGTAGGGCAAAGGAGGCTTTAGACAATTGTAAAGAGCTTTTGGATCTTGGAGTTGATCATCTTAATAACTCTTTGTCTTCTGTGGATTCCTCTTCCCTTTTTGACACCTTTGATGATCTTCAAACATGGTTAAGTGCTGCAGGTACATACCAACAAACTTGCATTGAAGGGTTTGATGAGGAAAAAGAATCACTAAAATTGAATGCAACAAACTACCTTAAAAACTCAACAGAGTTCACCAGTAACAGCCTGGCCATCATCACATGGATGAAGAAGGCGGCCGCAATGACCGTGAGCCGGCGGCGACGCCTGCTAAGTTCATCATTTCCAGAATGGGTTAGTTCCAAGGACAGGAAGTTACTTGGAAGCAAAGAAAAGAGTAATATTGTTGTGGCCAAAGATGGGAGTGGGAAATACAAGACAATATCCGAGGCATTGAAACATGTTCCAGAGAAGAGTAGTAAGAGGACAGTGATTTATGTGAAGAGAGGAGTTTACTATGAGAATGTTAGAGTTGAGAAGAACAAATGGAATGTGATGATGATTGGTGATGGCATGAATGCTACTATTGTTTCTGCTAGCCTTAACTTTGTTGATGGCACACCAACCTTTTCATCTGCTACTTTTGCTGTGTTTGGGAAGAATTTCATAGCAAGAGACATGGGATTTAGAAACACAGCTGGTCCACAGAAGCATCAAGCAGTGGCACTAATGACAACTGGGGATGAAGCTGTTTATTACAGATGCCAATTTGATGCATTTCAAGACACACTCTATGCTCATTCCAATCGCCAATTTTACAGAGAATGCAACATTTTTGGTACAGTTGATTTCATCTTTGGCAACTCTGCTGTTGTCATTCAAAATTGTAACATTTTCCCAAAGTTACCAATTCCTGGCCAGCAGAACACTATCACTGCACAAGGCAAAACTGATCCCAACATGAACACAGGTATCTCAATACAAAATTGCAAGATTTCAGGCTTTGGGAACTTGAGTTCTGTCCAAACATACTTGGGAAGGCCATGGAAGGATTACTCAACCACAGTGTTCATTAGATCCAAAATGGAAGCTTTAATTAACCCAAATGGATGGTTACCTTGGGTAGGAAACTCAGCACCAGACACCATCTATTATGCTGAATTTCAGAACTATGGACCAGGGGCTTCTACAGCAAATAGAGTCAAGTGGAAGGGCTTGAGAGCTATTTCTTCTAAACAAGCTAGCAAGTTTACAGTCAAGACTTTTCTTGGTGGCCAAAGATGGATTCCTGCATCTTCTGCTCCTTTTCAGTCTGATCTGTGA 1725 0.4133 MSSFKSYGKVDEHDQMLHQTQIKTRKRIIIISLSSIILVAVVLAAVFGILNNSRDHNSQQDGGSVLATSVKAICDVTLYKESCYSSLSSVVNSSAGEVKPEELLRLSIKVALEEVSNVVNRFFSSDSGGHNGHFQGLNNDGRAKEALDNCKELLDLGVDHLNNSLSSVDSSSLFDTFDDLQTWLSAAGTYQQTCIEGFDEEKESLKLNATNYLKNSTEFTSNSLAIITWMKKAAAMTVSRRRRLLSSSFPEWVSSKDRKLLGSKEKSNIVVAKDGSGKYKTISEALKHVPEKSSKRTVIYVKRGVYYENVRVEKNKWNVMMIGDGMNATIVSASLNFVDGTPTFSSATFAVFGKNFIARDMGFRNTAGPQKHQAVALMTTGDEAVYYRCQFDAFQDTLYAHSNRQFYRECNIFGTVDFIFGNSAVVIQNCNIFPKLPIPGQQNTITAQGKTDPNMNTGISIQNCKISGFGNLSSVQTYLGRPWKDYSTTVFIRSKMEALINPNGWLPWVGNSAPDTIYYAEFQNYGPGASTANRVKWKGLRAISSKQASKFTVKTFLGGQRWIPASSAPFQSDL* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3581 574 Gene3D - 262 574 IPR012334 -
Amo20g3581 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 231 IPR035513 -
Amo20g3581 574 PANTHER PECTINESTERASE 5 572 - -
Amo20g3581 574 Pfam Pectinesterase 268 559 IPR000070 GO:0030599|GO:0042545
Amo20g3581 574 PANTHER PECTINESTERASE 5 572 - -
Amo20g3581 574 CDD PMEI-like_3 72 232 - -
Amo20g3581 574 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Amo20g3581 574 Pfam Plant invertase/pectin methylesterase inhibitor 69 226 IPR006501 GO:0004857
Amo20g3581 574 SUPERFAMILY Pectin lyase-like 266 571 IPR011050 -
Amo20g3581 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 230 IPR035513 -
Amo20g3581 574 SMART PMEI_2 65 226 IPR006501 GO:0004857
Amo20g3581 574 TIGRFAM PME_inhib: pectinesterase inhibitor domain 46 230 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3581 Amo-Chr20 146310233 146316656 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3581 7 574 Carbohydrate Esterase AT3G10710 53.913 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3581 - - gmx:100811152 769.229