Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3577 ATGGAAGAAGGGTTAGCTCAAAACTCAGTTCCACCTTCAGGTCCCATTGATAAGTCAAGGATTCTGGATGTGAAACCGATGCGTAGTTTGATACCGGTGTTCCCAATGTCACCTCAAGCTCCAGCCTCTGGGCAGTACCCTTCAGGGTTTTCACCATTTTTCCCATTTGGTGCACCTCAGCAAGGATCTTCGGGGGCCCCAAGGGGTGGTGCCATACCGGCTCCGATACGGGCTTATAGGAGCCCTGCTGGGGCGGGAGACGGTGGGACGTCGATGGATGGGTCTAGTGGGAGGAAGAATGCAGCTTCTCGAAGTGCTAGATCGGCTGCAAAGAGGAATAAGAAAGCTGTAGGAGTACCTGTTGATGCAAGTGGTTTGGTTGGTATAAGCCCGGCTCAAAGGGAAGACGGAAGCCGGGAAGTTGTTCATCTTATAATGACAACATTTGATGCGATTCGGAGAAGGATCTGCCAACTTGATGATGCCAAGGAATTGAGCACCGGGTCAATCAAGCGGTCGGATCTTAAAGCTTGCAATACTTTGATGAGCAAAGGGATTCGAACAAACTTGAGGAAGAGAGTGGGAGCAGTTCCTGGGGTTGAGATAGGGGATATCTTCTATTTCCGAATGGAGTTATGTATTGTTGGTCTGCATGCTCCCTCCATGGGTGGAATTGACTCTTTGCATGTGAAGGGTGAGTTCGAGGAGGAAATTATCGCTATAAGCATTGTTTCATCAGGAGAATATGATGATGAAGCTGAGGATAATGATGTTATAATTTATACCGGTCAGGGTGGGAACTTCAACAAGAAAGATAAGCATGTGACAGATCAAAAGCTTGAAAGGGGTAATCTTGCTTTGGATAGAAGTTCACGACAACGCAACGAGGTAAGAGTCATTCGGGGCATAAGAGATGGCGCCAATCCAAATTCAAAGATCTATGTCTATGATGGTCTGTATAAAATCCAAGATTCTTGGGTCGACAGGGCAAAAAGTGGCGGTGGTGTGTTCAAGTATAAGTTGGTAAGAGTTCCGGGGCAGCCGAGTGCGTTTGCTGTTTGGAAATCAGTTCAGAAATTCAAGTCTGGATTCCCTTCGAGGACCGGGCTTATTATTGGAGACCTCTCCTCAGGAGCCGAGAGTATTCCGGTATCACTTGTCAATGATGTTGATAATGTGAAGGCGCCTGCATATTTCACTTACTTCCATTCCCTCAGGCATCCGAAATCGTTCAGTTTGATGCAGCCTTCACATGGCTGCAGCTGTGGTAAATCATGTGTCCCTGGTGATTTGAACTGCTCTTGCATTAGGAGAAACGACGGAGATTTTCCGTACACCGGTGGCAGCATTTTGGTGAGTCGAAGGCCGCTGATTCATGAATGTGGCCCCACATGCCAGTGTTTCCCTAACTGCAAAAATCGAGCCTCCCAGACCGGTCTGAAGCACCACATGGAAGTATTCAAAACAAAGGATAGAGGATGGGGTCTTAGATCACTGGATCCTATTCGTGCCGGTTCTTTCATTTGTGAGTATGCAGGAGAAGTTATTGATCAAGCAAGGTTGAATCAGCTCGCGAAGGAAGGAGATGGTAATGAATATGTTTTCGACACAACTCGAATTTATGAGGAATTCAAGTGGAACTATGAACCTAGATTACTCGAAGAAGTTAGCACAAATGACTCTACAGAGGACTACACTATGCCGTATCCTCTTATTATTAGTGCCAAGAATGTTGGGAATGTAGCTAGATTCATGAACCATAGTTGCTCCCCGAATGTTTTCTGGCAACCTATCTTATATGAAGAAAACAATCAATCATTCCTACATGTGGCGTTTTTCGCAATCAGTCACATTCCCCCGATGACCGAGTTAACCTATGACTATGGTATTGCTAGTTCTGGGCATGCTGGTGGTAGCAGAGATTCCAAAGGGAAAAAGAGGTGCTTATGTGGATCGTCAAAATGCCGCGGTTCCTTTGGTTGA 1983 0.4624 MEEGLAQNSVPPSGPIDKSRILDVKPMRSLIPVFPMSPQAPASGQYPSGFSPFFPFGAPQQGSSGAPRGGAIPAPIRAYRSPAGAGDGGTSMDGSSGRKNAASRSARSAAKRNKKAVGVPVDASGLVGISPAQREDGSREVVHLIMTTFDAIRRRICQLDDAKELSTGSIKRSDLKACNTLMSKGIRTNLRKRVGAVPGVEIGDIFYFRMELCIVGLHAPSMGGIDSLHVKGEFEEEIIAISIVSSGEYDDEAEDNDVIIYTGQGGNFNKKDKHVTDQKLERGNLALDRSSRQRNEVRVIRGIRDGANPNSKIYVYDGLYKIQDSWVDRAKSGGGVFKYKLVRVPGQPSAFAVWKSVQKFKSGFPSRTGLIIGDLSSGAESIPVSLVNDVDNVKAPAYFTYFHSLRHPKSFSLMQPSHGCSCGKSCVPGDLNCSCIRRNDGDFPYTGGSILVSRRPLIHECGPTCQCFPNCKNRASQTGLKHHMEVFKTKDRGWGLRSLDPIRAGSFICEYAGEVIDQARLNQLAKEGDGNEYVFDTTRIYEEFKWNYEPRLLEEVSTNDSTEDYTMPYPLIISAKNVGNVARFMNHSCSPNVFWQPILYEENNQSFLHVAFFAISHIPPMTELTYDYGIASSGHAGGSRDSKGKKRCLCGSSKCRGSFG* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3577 660 MobiDBLite consensus disorder prediction 93 107 - -
Amo20g3577 660 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 658 - -
Amo20g3577 660 ProSiteProfiles Post-SET domain profile. 644 660 IPR003616 -
Amo20g3577 660 ProSiteProfiles Pre-SET domain profile. 418 479 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo20g3577 660 Pfam SAD/SRA domain 194 347 IPR003105 -
Amo20g3577 660 MobiDBLite consensus disorder prediction 54 116 - -
Amo20g3577 660 SMART preset_2 372 466 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo20g3577 660 ProSiteProfiles SET domain profile. 482 629 IPR001214 GO:0005515
Amo20g3577 660 SMART G9a_1 190 347 IPR003105 -
Amo20g3577 660 Gene3D SET domain 365 659 IPR046341 -
Amo20g3577 660 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 22 660 IPR025794 GO:0016571
Amo20g3577 660 Gene3D - 177 362 IPR036987 -
Amo20g3577 660 MobiDBLite consensus disorder prediction 1 22 - -
Amo20g3577 660 Pfam Pre-SET motif 376 474 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo20g3577 660 SUPERFAMILY SET domain 381 657 IPR046341 -
Amo20g3577 660 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 658 - -
Amo20g3577 660 Pfam SET domain 493 629 IPR001214 GO:0005515
Amo20g3577 660 ProSiteProfiles YDG domain profile. 195 343 IPR003105 -
Amo20g3577 660 SUPERFAMILY PUA domain-like 177 364 IPR015947 -
Amo20g3577 660 SMART set_7 482 635 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3577 Amo-Chr20 146252372 146256308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3577 8 660 Su(var)3-9 homologs AT1G73100 53.028 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo20g3577 SAD_SRA 4.4e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3577 K24405 - gmx:100812173 1048.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3577 20 146252372 146256308 Amo20g3577 20 146252372 146256308 ECH