Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3573 ATGAAAACTTCATCTTCTCTTCATCCACACCACCATTTTCCTTCCACTAAATTTTACACTTCCATCACCACAAGAGTTTACATCAGGACTCAACTCTCTTTTCCTGCAAAGGTGTTCTTGTGCCAGGCAAAATCTGGCACAAATGGGTCGTTAAACGTGCGAGTGATGCCTCCCACTCTGTTAGCAGCAGAAAAGGAAGAAGCCAAGGCTGTATTGATGCTGTTTTTGAAAAAAGAAGGCTTGAGCAATGCCATTGCAGCGAGAACTGTCAACAAATCAGATCCTTTTATTGATCACCTTGTCTCGGTGCTTCACTCTAAACACAAATCTCGGTACCTCGTAGGGAGAGAACTTACAACACTTGAAATCAGGGATGCTCTTGTCCCATACCTTGAATCTCTTCTCGAAGAGCACGGTGATAGTCTAGTCGATGTAGTCGAAAACTATCCAAATCCCCCGGTTAAGGAAAAACCAGCTGTGCAGGTTCCTCCTCCTACTCCAATAATAGACTCTAAGAAGCTTAGAACCGTGTCTCGAGTGAATGCAATAGACACGACTGCTGGCAATCTTCGCCCTCATATTGTCTATCTCATAGAGTTCGGTATGAGTATTGAGCAAATCAATGGTATTATTCGGCGATTCCCGTCTTTTGCCTACTACAGCTTGGAGGGTAAAATTAAGCCTGTAGTTGAGTTTTTTCTTGAACTTGGAGTTCCGAAAGAGGACATCCCCACCATCCTCACTAAAAGGCCTCAATTATGTGGAATCAGCCTGTCGGAAAATCTTAAACCCACCATGAAGTTCTTAGAATCCTTAGGCGTTGACAAGAAACAATGGGCGAAGGTGATATACCGCTTCCCGGCTCTTCTAACTTATAGTAGGGAGAAGGTGGAGGAGAGCATAGATTTTCTCCGAGAATCAGGCCTGTCAGACGATAACATAGGTAAGATCTTAACTCGCTGCCCCAATATTGTAAGTTATAGTGTAGAGGACAACCTACGACCCACGGCTAATTACTTCCGATCCTTGGGAGTGGATGTTGGTGTTCTTCTGTTCCGTTGTCCACAGAATTTCGGTCTTAGCATTGAGGCCAATCTGAAGCCTGTAACACAGTTTTTCTTGGAAAAGGGATACACTTTGGATGAAATTGGGACTATGATTTCAAGATTTGGTGCCTTGTACACCTTTAGCTTGTCAGACAATTTGATTCCGAAATGGGATTTCTTCATCACTATGGGTTACCCAAATTCTGAGCTTGTTAAATTCCCTCAGTTTTTTGGATACAGTTTGGAAGAAAGGATTAAACCAAGATATGCACGGATGAAGAGAGCTGGGGTCAGGTTATTGCTCAACCAGGTTCTGTCACTGTCTAGCCGGAACTTCGAAGAGGCCTTAGAAAAGAAACTGAAAAAGAATTCGAGTTGA 1425 0.433 MKTSSSLHPHHHFPSTKFYTSITTRVYIRTQLSFPAKVFLCQAKSGTNGSLNVRVMPPTLLAAEKEEAKAVLMLFLKKEGLSNAIAARTVNKSDPFIDHLVSVLHSKHKSRYLVGRELTTLEIRDALVPYLESLLEEHGDSLVDVVENYPNPPVKEKPAVQVPPPTPIIDSKKLRTVSRVNAIDTTAGNLRPHIVYLIEFGMSIEQINGIIRRFPSFAYYSLEGKIKPVVEFFLELGVPKEDIPTILTKRPQLCGISLSENLKPTMKFLESLGVDKKQWAKVIYRFPALLTYSREKVEESIDFLRESGLSDDNIGKILTRCPNIVSYSVEDNLRPTANYFRSLGVDVGVLLFRCPQNFGLSIEANLKPVTQFFLEKGYTLDEIGTMISRFGALYTFSLSDNLIPKWDFFITMGYPNSELVKFPQFFGYSLEERIKPRYARMKRAGVRLLLNQVLSLSSRNFEEALEKKLKKNSS* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3573 474 Pfam mTERF 189 303 IPR003690 GO:0003690|GO:0006355
Amo20g3573 474 Pfam mTERF 298 462 IPR003690 GO:0003690|GO:0006355
Amo20g3573 474 Pfam mTERF 187 376 IPR003690 GO:0003690|GO:0006355
Amo20g3573 474 PANTHER CGI-12 PROTEIN-RELATED 26 472 IPR003690 GO:0003690|GO:0006355
Amo20g3573 474 Gene3D Transcription termination factor 3, mitochondrial 251 471 IPR038538 -
Amo20g3573 474 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC 26 472 - -
Amo20g3573 474 SMART mt_12 384 415 IPR003690 GO:0003690|GO:0006355
Amo20g3573 474 SMART mt_12 208 239 IPR003690 GO:0003690|GO:0006355
Amo20g3573 474 SMART mt_12 348 379 IPR003690 GO:0003690|GO:0006355
Amo20g3573 474 SMART mt_12 416 447 IPR003690 GO:0003690|GO:0006355
Amo20g3573 474 SMART mt_12 315 346 IPR003690 GO:0003690|GO:0006355
Amo20g3573 474 SMART mt_12 280 310 IPR003690 GO:0003690|GO:0006355
Amo20g3573 474 SMART mt_12 244 275 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo20g3573 mTERF 2.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3573 K15032 K12177 gmx:100781900 738.799