Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo20g3571 | ATGGAACCATTCGTTTGGTACTGCAAGCCTGAATCAAACAGTGTTTGGGCCAAAGCAGTTGATAGCGCCTTTGGTTCCTATACGCCATGTGCAATCAATACTCTTGTAATTTCAACCTCCAATTTCGTTCTTATGGGACTTTGCTTCTATAGAATTTGGCTTATTGCTACAAACACAAAGGCTCAGAGGTTTTCCTTGCGTTCTAATTGGTATAATTATGTTCTCGCATTGTTGGCTTCTTATTGTGCTATTCAGCCTCTGTTGAGATTGTTGACTGGAATTTCAGCATTTAACTTGAATGGTGAAACTGGATTTGCTCCTTTTGAGGCAATGGCCTTGATAGTTGAAGCGCTTACATGGTGTTCGATGATAGTTCTCATTCTATTGGAAACCAAGGTTTATATCCGACAATTTAGATGGGTGGTGCGGTTTGGAGTTATCTATGTTTTGGTTGGAGATGTTGTATTGCTTAACCTTCTTCTGTCAGTGAAAGATTACTGCAGTAGATCTGCCCTGTTTCTGTACCTTAGTACTTTTATCTGCCAGGTCTTGTTTGGTACATTGCTTTTTGTTTACGTACCTAACTTGGTTCCTTATGATGGCCATATAACAATGCAAGACGAGCTTCCTGACAATGCTGAGTATGAACTACTTTGTGGAGAGGAACAAGTTTTCCCTGAGATGCATGCTAATATATTCTCTAGATTATGTTTTGGATGGGTAACTCCACTCATGCGGCAAGGTTACAGAAAACCCATCAGAGAAAAGGATGTTTGGAAGCTAGACAAGTGTGATCAGACAGAGACATTAACAGAAAAGTTTCAAAAGTGTTGGATGTTAGAATTTCAAAGCTCTAACCCATGGCTTTTAAGATCTTTGAACAACAGCTTAGGGAAGAGGTTTTGGTGGGGAGGCATCTATAAGATTGGTAATGATCTTTCCCAGTTTGTTGGGCCAATTCTGCTGAACCATCTGTTAAATTCAATGCAAAATCAAGATCCATCTTGGGTTGGTTACATCTATGCTTTCTCCATATTTGTTGGAGTGTCACTTGGTGTTCTATGTGAAGCTCAATATTTCCAGAATGTGATGCGTGTTGGTTTTCAGCTTAGATCAACTTTGGTGGCTGCTATATTTAGAAAATCTTTGAGGCTAACTAATGAAGGTCGAAAGAAGTTCTCATCTGGGAAACTTATGAATATGATAACTACAGACGCCAATGCACTACAGCAAATATGTCAACAACTTCATGGACTTTGGTCAGCACCATTCCGTATCATCATAGCGATGGTTCTCCTATACCAGCAACTAGGCGTTGCTTCACTCATTGGATCGCTAATGCTAGTTCTCATTGTCCCACTACAGACATACGTGATTGCCAAAATGAGAAAACTGACAAAGGAAGGACTGCAGCAAACAGACAAGAGGGTTGGTATCATGCATGAAATTCTGGCTGCCATGGATACTGTAAAATGTTATGCATGGGAAACAAGCTTTCAATGTAGAGTACAAAGCATACGGGATTATGAGCTATCTTGGTTTCGCAAAGCACATCTGTTAAATGCTCTCAATACCTTTATTCTAAATAGCATCCCAGTTCTTGTGACTGTAACTTCATTTGGAATGTTTACTTTACTTGGTGGAGAATTGACTCCTGCAAGGGCATTTACCTCACTATCTCTATTCACAGTTTTGCGCTTTCCATTAAACATGCTACCAAATTTACTAAGTCAGGTAGCAAATGCAAATGTATCGTTGCAAAGGCTGGAAGAATTATTCTTGGCTGAGGAGCGAAATCTAAAACAAAATCCACCTCTTGTACCAGGACTTCCAGCCATATCAATAAAAAATGGAAACTTTTCATGGGATGCAAAGGCAGAGAAGTCCACACTATCAAATATCAATGTGGAAATACCAATTGGAAGCTTAGTTGCAATAGTTGGTGGTACTGGAGAAGGAAAAACATCACTTATTTCAGCAATGATTGGAGAGCTACCTCTTTTAAAAGATGGAAATGCTATAATTAGAGGCACTGTTGCTTATGTTCCTCAGATTTCATGGATTTACAATGCTACAGTACGCGAAAACATATTGTTTGGGTCAGAATTCGAATATGAACGATATTGGAAGGCCATTGATGTCACTGCTTTACAGCATGATCTCAACTTATTACCAGCACGTGATTTTACAGAGATTGGAGAAAGAGGAGTCAATATTAGTGGTGGACAAAAGCAAAGAGTTTCCTTAGCTAGGGCAGTCTATTCAGATTCAGATGTATATATATTCGATGATCCTTTAAGTGCTCTCGATGCTCATGTTGCTCATGAGGTTTTCAAAAACTGTATAAAGGAAGCACTGGGAGGAAAAACAAGGGTTCTTGTCACCAACCAGCTACATCTTCTCCCTCAAGTGGATAAAATTATTCTCCTTAGTGACGGCATGATTAAAGAGCAGGGAACTTTTGAGGAGTTATCAAAGTGTGGGTATCTATTTCAGAGACTAATGGAAAATGCTGGGAAAATGGAACAACAATCAGAGAGTAATGAAGGTAGAGAGGACCATGTCGAGGTTAATGTTTCAACCTCGAGCAATGAGGCACTTGTTCAGATTCCAAACGACACAAGCTATGAGAAGAAGGGAAAATTACGCAAATCAGTGCTTGTTAAGCAAGAAGAGCGGGAGACTGGTGTGGTTAGCTTGAAAGTTTTGGCGAGGTATAAATCTGCATTAGGAGGCCTATGGGTAGTTTTCATACTCTTTGCCTGCTACACATTAACAGAAGTTCTTCGAATTTCAAGTAGCACATGGTTAAGTGTTTGGACAGATCAAGATTCCACTTCAGATTATAATCCAGTATATTTTCTTGTCGTCTATGCACTTTTCTCCTTTGGACAGGTAGCTGTAACACTTGCAAACTCTTATTGGTTGATCATTTCTAACCTCCGTGCTGCAAAAAGATTGCATGATGCAATGCTAGATAAAATACTTCGGGCCCCAATGGTATTCTTCCAAACTAATCCTGTTGGCCGCATAATTAACAGGTTTGCAAAAGACATGGGAGACATAGACACCATGGTTTCTACTTTGGTGAATCAGTTTATGGGGCAACTCTGGCAGCTACTTTCTACCTTTGTTCTCATTGGCACTGTGAGCACAATATCTCTGTGGGCTATAATGCCATTGCTGATCTTCTTTTATGGAGCTTATATATATTACCAGAGCACAGCTCGAGAAGTGAAGCGTTTGGATTCAATTACAAGATCTCCTGTTTATGCACACTTTGGAGAAGCGTTGAATGGTTTGGCAAGCATACGCGCTTACAAAGCATATGATAGAATGGCTCACATTAATGGAAAATTCATGGATAAAAATATCAGATTTACCCTTGTGAATATTAGTTCAAACCGTTGGCTCACCATAAGGTTAGAATCATTAGGAGGGCTCATGATTTGGTTCATAGCTACATTTGCTGTATTGCAAAATGGAAGATCTGAAAACCAGGCAGCATTTGCATCTACAATGGGCCTTCTTCTCAGTTATACTTTAAACATAACAAGTCTCTTGAGTGGTGTCCTGAGACAAGCAAGTAGAGCTGAAAATAGTTTAAATGCTGTTGAGCGTGTTGGCACATACATTGATTTGGAAACTGAGGCTCCAAGAATAATTGAGACAAACCGTCCACCACCAGGATGGCCAACATCTGGATTAGTTGAGTTTGAGAATGTTGTCCTGAGTTACAGGCCTGAACTTCCTCCAGTCTTGCATGGACTGTCCTTTACGGTATTGCCAACCGAGAAGGTTGGGGTAGTTGGAAGAACTGGTGCAGGAAAATCTAGCATGCTTAATGCTTTATTCCGTATCGTTGAGCTACAAAGTGGAAGAATCATTATTGATGGTTTTGACATTTCTATGTTTGGACTAGCAGATTTGCGAAGAGTTCTAACTATCATACCTCAATCACCAGTTCTTTTCTCTGGAACTGTTCGCTTCAATCTTGATCCATTTACTGAACACAATGATGCCGACATGTGGCAAGCTTTAGAAAGGGCACATTTGAAGGATGTAATAAGAAGAAATCCACTTGGTCTAGATGCACAGGTCTTGGAGGGTGGAGATAATTTTAGTGTTGGACAGAGGCAACTATTAAGTCTAGCCAGAGCATTGCTTCGAAGATCAAAGGTTCTTGTCCTGGACGAAGCGACTGCTGCTGTTGATGTTAGAACAGATGCTCTTATACAGAAAACCATCCGACAAGAGTTTCAGTCCTGCACAATGCTCATCATTGCACACAGACTAAATACAGTTATTGACTGCAATCGGATTCTATTGCTCGATTCTGGACGGGTCCTTGAGTATGACTCGCCGGACAAACTCTTATCGAATGAAGCAAGTGCATTCTACAAGATGGTTCAAAGTACAGGAGCTGCAAATGCTGAGTATTTATGTAGTTTAGTTTTTGGAAGGATTGTGAACAATTCTAATGAAGAAAACAAGGGACTTGAAAATCAAATGAGACAGTTAGCTTCTTCCAACTGGGCTGCTGCTACACAATGTGCTATAGCTGCAACCCTTTCTTCATTGCATCTTAACCTTCAAAGCCCAAATGAAACTAAAGACAACAAAGATTTCCTCGAAAAAACGAAGGACGCGTTGACAACACTTCAGGAAGTTCTGGAAGGGAAGCATGATGATGTTATACAACAGACACTTGTTAAACACAATGTTCCTACAGAAAGATGGTGGTCTACACTTCATCAATTAGTTGAAGGTTTGTCTGTCTTGATCAAGTTACCTCCGAAAAACATTCAACAATTGGAACTTGATTTTGAAAGAAGGTCCTTTCACTGA | 4848 | 0.4002 | MEPFVWYCKPESNSVWAKAVDSAFGSYTPCAINTLVISTSNFVLMGLCFYRIWLIATNTKAQRFSLRSNWYNYVLALLASYCAIQPLLRLLTGISAFNLNGETGFAPFEAMALIVEALTWCSMIVLILLETKVYIRQFRWVVRFGVIYVLVGDVVLLNLLLSVKDYCSRSALFLYLSTFICQVLFGTLLFVYVPNLVPYDGHITMQDELPDNAEYELLCGEEQVFPEMHANIFSRLCFGWVTPLMRQGYRKPIREKDVWKLDKCDQTETLTEKFQKCWMLEFQSSNPWLLRSLNNSLGKRFWWGGIYKIGNDLSQFVGPILLNHLLNSMQNQDPSWVGYIYAFSIFVGVSLGVLCEAQYFQNVMRVGFQLRSTLVAAIFRKSLRLTNEGRKKFSSGKLMNMITTDANALQQICQQLHGLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLIVPLQTYVIAKMRKLTKEGLQQTDKRVGIMHEILAAMDTVKCYAWETSFQCRVQSIRDYELSWFRKAHLLNALNTFILNSIPVLVTVTSFGMFTLLGGELTPARAFTSLSLFTVLRFPLNMLPNLLSQVANANVSLQRLEELFLAEERNLKQNPPLVPGLPAISIKNGNFSWDAKAEKSTLSNINVEIPIGSLVAIVGGTGEGKTSLISAMIGELPLLKDGNAIIRGTVAYVPQISWIYNATVRENILFGSEFEYERYWKAIDVTALQHDLNLLPARDFTEIGERGVNISGGQKQRVSLARAVYSDSDVYIFDDPLSALDAHVAHEVFKNCIKEALGGKTRVLVTNQLHLLPQVDKIILLSDGMIKEQGTFEELSKCGYLFQRLMENAGKMEQQSESNEGREDHVEVNVSTSSNEALVQIPNDTSYEKKGKLRKSVLVKQEERETGVVSLKVLARYKSALGGLWVVFILFACYTLTEVLRISSSTWLSVWTDQDSTSDYNPVYFLVVYALFSFGQVAVTLANSYWLIISNLRAAKRLHDAMLDKILRAPMVFFQTNPVGRIINRFAKDMGDIDTMVSTLVNQFMGQLWQLLSTFVLIGTVSTISLWAIMPLLIFFYGAYIYYQSTAREVKRLDSITRSPVYAHFGEALNGLASIRAYKAYDRMAHINGKFMDKNIRFTLVNISSNRWLTIRLESLGGLMIWFIATFAVLQNGRSENQAAFASTMGLLLSYTLNITSLLSGVLRQASRAENSLNAVERVGTYIDLETEAPRIIETNRPPPGWPTSGLVEFENVVLSYRPELPPVLHGLSFTVLPTEKVGVVGRTGAGKSSMLNALFRIVELQSGRIIIDGFDISMFGLADLRRVLTIIPQSPVLFSGTVRFNLDPFTEHNDADMWQALERAHLKDVIRRNPLGLDAQVLEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLIIAHRLNTVIDCNRILLLDSGRVLEYDSPDKLLSNEASAFYKMVQSTGAANAEYLCSLVFGRIVNNSNEENKGLENQMRQLASSNWAAATQCAIAATLSSLHLNLQSPNETKDNKDFLEKTKDALTTLQEVLEGKHDDVIQQTLVKHNVPTERWWSTLHQLVEGLSVLIKLPPKNIQQLELDFERRSFH* | 1616 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo20g3571 | 1615 | Coils | Coil | 572 | 592 | - | - | |
Amo20g3571 | 1615 | CDD | ABC_6TM_ABCC_D1 | 303 | 589 | IPR044746 | GO:0140359 | |
Amo20g3571 | 1615 | CDD | ABC_6TM_ABCC_D2 | 916 | 1212 | IPR044726 | GO:0140359 | |
Amo20g3571 | 1615 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 302 | 581 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Amo20g3571 | 1615 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 917 | 1200 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Amo20g3571 | 1615 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 607 | 836 | IPR027417 | - | |
Amo20g3571 | 1615 | SUPERFAMILY | ABC transporter transmembrane region | 288 | 593 | IPR036640 | GO:0005524|GO:0016021 | |
Amo20g3571 | 1615 | ProSitePatterns | ABC transporters family signature. | 1374 | 1388 | IPR017871 | GO:0005524 | |
Amo20g3571 | 1615 | SMART | AAA_5 | 640 | 820 | IPR003593 | - | |
Amo20g3571 | 1615 | SMART | AAA_5 | 1263 | 1456 | IPR003593 | - | |
Amo20g3571 | 1615 | CDD | ABCC_MRP_domain2 | 1235 | 1455 | - | - | |
Amo20g3571 | 1615 | Pfam | ABC transporter transmembrane region | 916 | 1168 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Amo20g3571 | 1615 | Pfam | ABC transporter transmembrane region | 305 | 569 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Amo20g3571 | 1615 | Pfam | ABC transporter | 1254 | 1402 | IPR003439 | GO:0005524 | |
Amo20g3571 | 1615 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 615 | 837 | IPR003439 | GO:0005524 | |
Amo20g3571 | 1615 | Gene3D | ABC transporter type 1, transmembrane domain | 878 | 1218 | IPR036640 | GO:0005524|GO:0016021 | |
Amo20g3571 | 1615 | Gene3D | ABC transporter type 1, transmembrane domain | 282 | 596 | IPR036640 | GO:0005524|GO:0016021 | |
Amo20g3571 | 1615 | Gene3D | - | 1221 | 1473 | IPR027417 | - | |
Amo20g3571 | 1615 | ProSitePatterns | ABC transporters family signature. | 739 | 753 | IPR017871 | GO:0005524 | |
Amo20g3571 | 1615 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1237 | 1471 | IPR003439 | GO:0005524 | |
Amo20g3571 | 1615 | Pfam | ABC transporter | 631 | 766 | IPR003439 | GO:0005524 | |
Amo20g3571 | 1615 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1228 | 1470 | IPR027417 | - | |
Amo20g3571 | 1615 | Gene3D | - | 597 | 862 | IPR027417 | - | |
Amo20g3571 | 1615 | PANTHER | ABC TRANSPORTER C FAMILY MEMBER 11-RELATED | 35 | 1492 | - | - | |
Amo20g3571 | 1615 | SUPERFAMILY | ABC transporter transmembrane region | 913 | 1217 | IPR036640 | GO:0005524|GO:0016021 | |
Amo20g3571 | 1615 | CDD | ABCC_MRP_domain1 | 613 | 813 | - | - | |
Amo20g3571 | 1615 | Coils | Coil | 1490 | 1510 | - | - | |
Amo20g3571 | 1615 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 35 | 1492 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo20g3571 | Amo-Chr20 | 146177536 | 146192246 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo20g3571 | 613 | 826 | Calmodulin-binding Proteins | AT2G36910 | 29.956 | 1.64e-24 | 110 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo20g3571 | - | K05665 | gmx:100811691 | 2675.97 |