Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3571 ATGGAACCATTCGTTTGGTACTGCAAGCCTGAATCAAACAGTGTTTGGGCCAAAGCAGTTGATAGCGCCTTTGGTTCCTATACGCCATGTGCAATCAATACTCTTGTAATTTCAACCTCCAATTTCGTTCTTATGGGACTTTGCTTCTATAGAATTTGGCTTATTGCTACAAACACAAAGGCTCAGAGGTTTTCCTTGCGTTCTAATTGGTATAATTATGTTCTCGCATTGTTGGCTTCTTATTGTGCTATTCAGCCTCTGTTGAGATTGTTGACTGGAATTTCAGCATTTAACTTGAATGGTGAAACTGGATTTGCTCCTTTTGAGGCAATGGCCTTGATAGTTGAAGCGCTTACATGGTGTTCGATGATAGTTCTCATTCTATTGGAAACCAAGGTTTATATCCGACAATTTAGATGGGTGGTGCGGTTTGGAGTTATCTATGTTTTGGTTGGAGATGTTGTATTGCTTAACCTTCTTCTGTCAGTGAAAGATTACTGCAGTAGATCTGCCCTGTTTCTGTACCTTAGTACTTTTATCTGCCAGGTCTTGTTTGGTACATTGCTTTTTGTTTACGTACCTAACTTGGTTCCTTATGATGGCCATATAACAATGCAAGACGAGCTTCCTGACAATGCTGAGTATGAACTACTTTGTGGAGAGGAACAAGTTTTCCCTGAGATGCATGCTAATATATTCTCTAGATTATGTTTTGGATGGGTAACTCCACTCATGCGGCAAGGTTACAGAAAACCCATCAGAGAAAAGGATGTTTGGAAGCTAGACAAGTGTGATCAGACAGAGACATTAACAGAAAAGTTTCAAAAGTGTTGGATGTTAGAATTTCAAAGCTCTAACCCATGGCTTTTAAGATCTTTGAACAACAGCTTAGGGAAGAGGTTTTGGTGGGGAGGCATCTATAAGATTGGTAATGATCTTTCCCAGTTTGTTGGGCCAATTCTGCTGAACCATCTGTTAAATTCAATGCAAAATCAAGATCCATCTTGGGTTGGTTACATCTATGCTTTCTCCATATTTGTTGGAGTGTCACTTGGTGTTCTATGTGAAGCTCAATATTTCCAGAATGTGATGCGTGTTGGTTTTCAGCTTAGATCAACTTTGGTGGCTGCTATATTTAGAAAATCTTTGAGGCTAACTAATGAAGGTCGAAAGAAGTTCTCATCTGGGAAACTTATGAATATGATAACTACAGACGCCAATGCACTACAGCAAATATGTCAACAACTTCATGGACTTTGGTCAGCACCATTCCGTATCATCATAGCGATGGTTCTCCTATACCAGCAACTAGGCGTTGCTTCACTCATTGGATCGCTAATGCTAGTTCTCATTGTCCCACTACAGACATACGTGATTGCCAAAATGAGAAAACTGACAAAGGAAGGACTGCAGCAAACAGACAAGAGGGTTGGTATCATGCATGAAATTCTGGCTGCCATGGATACTGTAAAATGTTATGCATGGGAAACAAGCTTTCAATGTAGAGTACAAAGCATACGGGATTATGAGCTATCTTGGTTTCGCAAAGCACATCTGTTAAATGCTCTCAATACCTTTATTCTAAATAGCATCCCAGTTCTTGTGACTGTAACTTCATTTGGAATGTTTACTTTACTTGGTGGAGAATTGACTCCTGCAAGGGCATTTACCTCACTATCTCTATTCACAGTTTTGCGCTTTCCATTAAACATGCTACCAAATTTACTAAGTCAGGTAGCAAATGCAAATGTATCGTTGCAAAGGCTGGAAGAATTATTCTTGGCTGAGGAGCGAAATCTAAAACAAAATCCACCTCTTGTACCAGGACTTCCAGCCATATCAATAAAAAATGGAAACTTTTCATGGGATGCAAAGGCAGAGAAGTCCACACTATCAAATATCAATGTGGAAATACCAATTGGAAGCTTAGTTGCAATAGTTGGTGGTACTGGAGAAGGAAAAACATCACTTATTTCAGCAATGATTGGAGAGCTACCTCTTTTAAAAGATGGAAATGCTATAATTAGAGGCACTGTTGCTTATGTTCCTCAGATTTCATGGATTTACAATGCTACAGTACGCGAAAACATATTGTTTGGGTCAGAATTCGAATATGAACGATATTGGAAGGCCATTGATGTCACTGCTTTACAGCATGATCTCAACTTATTACCAGCACGTGATTTTACAGAGATTGGAGAAAGAGGAGTCAATATTAGTGGTGGACAAAAGCAAAGAGTTTCCTTAGCTAGGGCAGTCTATTCAGATTCAGATGTATATATATTCGATGATCCTTTAAGTGCTCTCGATGCTCATGTTGCTCATGAGGTTTTCAAAAACTGTATAAAGGAAGCACTGGGAGGAAAAACAAGGGTTCTTGTCACCAACCAGCTACATCTTCTCCCTCAAGTGGATAAAATTATTCTCCTTAGTGACGGCATGATTAAAGAGCAGGGAACTTTTGAGGAGTTATCAAAGTGTGGGTATCTATTTCAGAGACTAATGGAAAATGCTGGGAAAATGGAACAACAATCAGAGAGTAATGAAGGTAGAGAGGACCATGTCGAGGTTAATGTTTCAACCTCGAGCAATGAGGCACTTGTTCAGATTCCAAACGACACAAGCTATGAGAAGAAGGGAAAATTACGCAAATCAGTGCTTGTTAAGCAAGAAGAGCGGGAGACTGGTGTGGTTAGCTTGAAAGTTTTGGCGAGGTATAAATCTGCATTAGGAGGCCTATGGGTAGTTTTCATACTCTTTGCCTGCTACACATTAACAGAAGTTCTTCGAATTTCAAGTAGCACATGGTTAAGTGTTTGGACAGATCAAGATTCCACTTCAGATTATAATCCAGTATATTTTCTTGTCGTCTATGCACTTTTCTCCTTTGGACAGGTAGCTGTAACACTTGCAAACTCTTATTGGTTGATCATTTCTAACCTCCGTGCTGCAAAAAGATTGCATGATGCAATGCTAGATAAAATACTTCGGGCCCCAATGGTATTCTTCCAAACTAATCCTGTTGGCCGCATAATTAACAGGTTTGCAAAAGACATGGGAGACATAGACACCATGGTTTCTACTTTGGTGAATCAGTTTATGGGGCAACTCTGGCAGCTACTTTCTACCTTTGTTCTCATTGGCACTGTGAGCACAATATCTCTGTGGGCTATAATGCCATTGCTGATCTTCTTTTATGGAGCTTATATATATTACCAGAGCACAGCTCGAGAAGTGAAGCGTTTGGATTCAATTACAAGATCTCCTGTTTATGCACACTTTGGAGAAGCGTTGAATGGTTTGGCAAGCATACGCGCTTACAAAGCATATGATAGAATGGCTCACATTAATGGAAAATTCATGGATAAAAATATCAGATTTACCCTTGTGAATATTAGTTCAAACCGTTGGCTCACCATAAGGTTAGAATCATTAGGAGGGCTCATGATTTGGTTCATAGCTACATTTGCTGTATTGCAAAATGGAAGATCTGAAAACCAGGCAGCATTTGCATCTACAATGGGCCTTCTTCTCAGTTATACTTTAAACATAACAAGTCTCTTGAGTGGTGTCCTGAGACAAGCAAGTAGAGCTGAAAATAGTTTAAATGCTGTTGAGCGTGTTGGCACATACATTGATTTGGAAACTGAGGCTCCAAGAATAATTGAGACAAACCGTCCACCACCAGGATGGCCAACATCTGGATTAGTTGAGTTTGAGAATGTTGTCCTGAGTTACAGGCCTGAACTTCCTCCAGTCTTGCATGGACTGTCCTTTACGGTATTGCCAACCGAGAAGGTTGGGGTAGTTGGAAGAACTGGTGCAGGAAAATCTAGCATGCTTAATGCTTTATTCCGTATCGTTGAGCTACAAAGTGGAAGAATCATTATTGATGGTTTTGACATTTCTATGTTTGGACTAGCAGATTTGCGAAGAGTTCTAACTATCATACCTCAATCACCAGTTCTTTTCTCTGGAACTGTTCGCTTCAATCTTGATCCATTTACTGAACACAATGATGCCGACATGTGGCAAGCTTTAGAAAGGGCACATTTGAAGGATGTAATAAGAAGAAATCCACTTGGTCTAGATGCACAGGTCTTGGAGGGTGGAGATAATTTTAGTGTTGGACAGAGGCAACTATTAAGTCTAGCCAGAGCATTGCTTCGAAGATCAAAGGTTCTTGTCCTGGACGAAGCGACTGCTGCTGTTGATGTTAGAACAGATGCTCTTATACAGAAAACCATCCGACAAGAGTTTCAGTCCTGCACAATGCTCATCATTGCACACAGACTAAATACAGTTATTGACTGCAATCGGATTCTATTGCTCGATTCTGGACGGGTCCTTGAGTATGACTCGCCGGACAAACTCTTATCGAATGAAGCAAGTGCATTCTACAAGATGGTTCAAAGTACAGGAGCTGCAAATGCTGAGTATTTATGTAGTTTAGTTTTTGGAAGGATTGTGAACAATTCTAATGAAGAAAACAAGGGACTTGAAAATCAAATGAGACAGTTAGCTTCTTCCAACTGGGCTGCTGCTACACAATGTGCTATAGCTGCAACCCTTTCTTCATTGCATCTTAACCTTCAAAGCCCAAATGAAACTAAAGACAACAAAGATTTCCTCGAAAAAACGAAGGACGCGTTGACAACACTTCAGGAAGTTCTGGAAGGGAAGCATGATGATGTTATACAACAGACACTTGTTAAACACAATGTTCCTACAGAAAGATGGTGGTCTACACTTCATCAATTAGTTGAAGGTTTGTCTGTCTTGATCAAGTTACCTCCGAAAAACATTCAACAATTGGAACTTGATTTTGAAAGAAGGTCCTTTCACTGA 4848 0.4002 MEPFVWYCKPESNSVWAKAVDSAFGSYTPCAINTLVISTSNFVLMGLCFYRIWLIATNTKAQRFSLRSNWYNYVLALLASYCAIQPLLRLLTGISAFNLNGETGFAPFEAMALIVEALTWCSMIVLILLETKVYIRQFRWVVRFGVIYVLVGDVVLLNLLLSVKDYCSRSALFLYLSTFICQVLFGTLLFVYVPNLVPYDGHITMQDELPDNAEYELLCGEEQVFPEMHANIFSRLCFGWVTPLMRQGYRKPIREKDVWKLDKCDQTETLTEKFQKCWMLEFQSSNPWLLRSLNNSLGKRFWWGGIYKIGNDLSQFVGPILLNHLLNSMQNQDPSWVGYIYAFSIFVGVSLGVLCEAQYFQNVMRVGFQLRSTLVAAIFRKSLRLTNEGRKKFSSGKLMNMITTDANALQQICQQLHGLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLIVPLQTYVIAKMRKLTKEGLQQTDKRVGIMHEILAAMDTVKCYAWETSFQCRVQSIRDYELSWFRKAHLLNALNTFILNSIPVLVTVTSFGMFTLLGGELTPARAFTSLSLFTVLRFPLNMLPNLLSQVANANVSLQRLEELFLAEERNLKQNPPLVPGLPAISIKNGNFSWDAKAEKSTLSNINVEIPIGSLVAIVGGTGEGKTSLISAMIGELPLLKDGNAIIRGTVAYVPQISWIYNATVRENILFGSEFEYERYWKAIDVTALQHDLNLLPARDFTEIGERGVNISGGQKQRVSLARAVYSDSDVYIFDDPLSALDAHVAHEVFKNCIKEALGGKTRVLVTNQLHLLPQVDKIILLSDGMIKEQGTFEELSKCGYLFQRLMENAGKMEQQSESNEGREDHVEVNVSTSSNEALVQIPNDTSYEKKGKLRKSVLVKQEERETGVVSLKVLARYKSALGGLWVVFILFACYTLTEVLRISSSTWLSVWTDQDSTSDYNPVYFLVVYALFSFGQVAVTLANSYWLIISNLRAAKRLHDAMLDKILRAPMVFFQTNPVGRIINRFAKDMGDIDTMVSTLVNQFMGQLWQLLSTFVLIGTVSTISLWAIMPLLIFFYGAYIYYQSTAREVKRLDSITRSPVYAHFGEALNGLASIRAYKAYDRMAHINGKFMDKNIRFTLVNISSNRWLTIRLESLGGLMIWFIATFAVLQNGRSENQAAFASTMGLLLSYTLNITSLLSGVLRQASRAENSLNAVERVGTYIDLETEAPRIIETNRPPPGWPTSGLVEFENVVLSYRPELPPVLHGLSFTVLPTEKVGVVGRTGAGKSSMLNALFRIVELQSGRIIIDGFDISMFGLADLRRVLTIIPQSPVLFSGTVRFNLDPFTEHNDADMWQALERAHLKDVIRRNPLGLDAQVLEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLIIAHRLNTVIDCNRILLLDSGRVLEYDSPDKLLSNEASAFYKMVQSTGAANAEYLCSLVFGRIVNNSNEENKGLENQMRQLASSNWAAATQCAIAATLSSLHLNLQSPNETKDNKDFLEKTKDALTTLQEVLEGKHDDVIQQTLVKHNVPTERWWSTLHQLVEGLSVLIKLPPKNIQQLELDFERRSFH* 1616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3571 1615 Coils Coil 572 592 - -
Amo20g3571 1615 CDD ABC_6TM_ABCC_D1 303 589 IPR044746 GO:0140359
Amo20g3571 1615 CDD ABC_6TM_ABCC_D2 916 1212 IPR044726 GO:0140359
Amo20g3571 1615 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 302 581 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g3571 1615 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 917 1200 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g3571 1615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 836 IPR027417 -
Amo20g3571 1615 SUPERFAMILY ABC transporter transmembrane region 288 593 IPR036640 GO:0005524|GO:0016021
Amo20g3571 1615 ProSitePatterns ABC transporters family signature. 1374 1388 IPR017871 GO:0005524
Amo20g3571 1615 SMART AAA_5 640 820 IPR003593 -
Amo20g3571 1615 SMART AAA_5 1263 1456 IPR003593 -
Amo20g3571 1615 CDD ABCC_MRP_domain2 1235 1455 - -
Amo20g3571 1615 Pfam ABC transporter transmembrane region 916 1168 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g3571 1615 Pfam ABC transporter transmembrane region 305 569 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g3571 1615 Pfam ABC transporter 1254 1402 IPR003439 GO:0005524
Amo20g3571 1615 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 837 IPR003439 GO:0005524
Amo20g3571 1615 Gene3D ABC transporter type 1, transmembrane domain 878 1218 IPR036640 GO:0005524|GO:0016021
Amo20g3571 1615 Gene3D ABC transporter type 1, transmembrane domain 282 596 IPR036640 GO:0005524|GO:0016021
Amo20g3571 1615 Gene3D - 1221 1473 IPR027417 -
Amo20g3571 1615 ProSitePatterns ABC transporters family signature. 739 753 IPR017871 GO:0005524
Amo20g3571 1615 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1237 1471 IPR003439 GO:0005524
Amo20g3571 1615 Pfam ABC transporter 631 766 IPR003439 GO:0005524
Amo20g3571 1615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1228 1470 IPR027417 -
Amo20g3571 1615 Gene3D - 597 862 IPR027417 -
Amo20g3571 1615 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 35 1492 - -
Amo20g3571 1615 SUPERFAMILY ABC transporter transmembrane region 913 1217 IPR036640 GO:0005524|GO:0016021
Amo20g3571 1615 CDD ABCC_MRP_domain1 613 813 - -
Amo20g3571 1615 Coils Coil 1490 1510 - -
Amo20g3571 1615 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 35 1492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3571 Amo-Chr20 146177536 146192246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3571 613 826 Calmodulin-binding Proteins AT2G36910 29.956 1.64e-24 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3571 - K05665 gmx:100811691 2675.97