Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3568 ATGATGGAAACGAAGCTCACTACTACTATCCTTGGATTCTTCTTGCTGAGCTTCTTCATCTGCTTCACCACAACAAGAGCACAATCATACCACTACGTTGGAGATGACTGCAAAAACTCGACGGAAGAATCTCTAACAAGTGGATTCAAAACCAACCTCAGCAGCGTCCTCTCATGGCTTTCCTCTGATGCTGCCACAAGCAAGGGATACAACCACACCGCCATCGGAACCGCCACTGGCGATGCCGTCTATGGCCTCTATGACTGCCGAGGTGACGTGACAGGCACCTTCTGCCAGTTTTGCGTGTTCGAAGCAGCTTCAGACATTGTTCGGCGCTGTCCAAACAGATCATCAGCAGTGATATGGTATAACTACTGCATACTCAGATACTCCAACCATGACTTCTTTGGTAACCTTACAATAACCCCATCATGGCAATTTCCTGGGACCAAGAACACCACCAACAGCACACAAGAACTCCAGAAAGCAGAGACTTACATGCAGAGCTTGATCAAGAATGCTACTGTGGAGACCAACTTGCTGTATGCAATGGGTGAGTTCAATTCTGGTGGTTCATCAGGGGAAAGGTATGGGTTCGTGCAGTGTAGTAGGGACCTTACTAGTGATCAGTGTAGGCAGTGTTTGAATGCTATGTTGGATCAAGTTCCTAAATGCTGTGCTACAAAAGTTGGATGGCAAGTTGGAGCTCCAAGTTGTTTGATCAAGTATGATGATTTTATGTTCTACAAGATTACTACCAGTCAAGGACCTTCTCCATCATTCAATTCAGGCAATAACAAGGGTACAAGTAAGACAAAAACCTTGATAATCATCATAGTGAGTGTGTTGGTGGCATTAGTTCTACTAAGTTGTGGCATCTACTTCTTATGGAGGAAGAATCAATCAAATCATGATGCATTATTGTCAGAGACCACTCCTATATCAATACATTATAACCCTTATCAAGGTCAAGGAGACGATTCATTGAATGCTGACCTTCCTACAATCCCTCTATTTTGGATTCGACAGAACACTAATAACTTTTCAGATTCTTGCAAATTAGGGGAAGGTGGATTTGGTCCTGTTTATAAGGGAAGCTTACAAGATGGGACAGAAGTTGCCATCAAAAGACTCTCAAAAACATCTGGCCAAGGTTTAGATGAGTTCAAGAATGAAGTAATCTTCATAGCCAAACTACAACATAGGAACCTTGTGAGACTGTTGGGTTGTTGTGTTGAGGAAAATGAAAAGCTGCTTATATACGAGTACATGTCCAATTCAAGCCTTGCCCTTCATCTATTCGACGTGGAAAAACGAAAGCAACTAAGTTGGAAGGTTCGAATGAATATTATCAAAGGAATCGCACGAGGACTTCTGTACCTTCATGAAGATTCTAGACTTAAAATAATTCATAGAGATATGAAAGCTAGTAATGTTCTACTTGATCAAGATATGAATCCAAAAATATCAGATTTTGGATTAGCAAGGACATTTGAAAAAGGCCAGAATGAAGAAAACACTAGAAGACGGATATATGGCTCCAGAATATGCTATGGAAGGGTTATATTCCAAATCATTGCTGGCAAAAGGAACAGTGGATTCTATCTTTCAGATCATGGTCAAAGTCTTCTTGTATATAGTTGGAAACTATGGTGTGAAGGAGAATGTTTAGAGTTAGTAGATCCTATATTAGAAAATACATACATAAGAAGTGAAGTTATAAGGTGTATTCATATTGGTTTGCTGTGTGTACAAGAAGATGCAATAGATCGACCAACAATGTCTACAGTGGTTGTTATGCTAGCAAGTGAGACAATGACACTTCCTAATCCTAATCATCCTGCATTTTCAGTTGGAAGAAAGTTCGGTAAAGAAGACGAGTCAACGTCAAAGACTTCTAAAGATAATATCTCTGTCAATGAAGTATCAATGTCAAATATTTTTCCTAGATAA 1953 0.4025 MMETKLTTTILGFFLLSFFICFTTTRAQSYHYVGDDCKNSTEESLTSGFKTNLSSVLSWLSSDAATSKGYNHTAIGTATGDAVYGLYDCRGDVTGTFCQFCVFEAASDIVRRCPNRSSAVIWYNYCILRYSNHDFFGNLTITPSWQFPGTKNTTNSTQELQKAETYMQSLIKNATVETNLLYAMGEFNSGGSSGERYGFVQCSRDLTSDQCRQCLNAMLDQVPKCCATKVGWQVGAPSCLIKYDDFMFYKITTSQGPSPSFNSGNNKGTSKTKTLIIIIVSVLVALVLLSCGIYFLWRKNQSNHDALLSETTPISIHYNPYQGQGDDSLNADLPTIPLFWIRQNTNNFSDSCKLGEGGFGPVYKGSLQDGTEVAIKRLSKTSGQGLDEFKNEVIFIAKLQHRNLVRLLGCCVEENEKLLIYEYMSNSSLALHLFDVEKRKQLSWKVRMNIIKGIARGLLYLHEDSRLKIIHRDMKASNVLLDQDMNPKISDFGLARTFEKGQNEENTRRRIYGSRICYGRVIFQIIAGKRNSGFYLSDHGQSLLVYSWKLWCEGECLELVDPILENTYIRSEVIRCIHIGLLCVQEDAIDRPTMSTVVVMLASETMTLPNPNHPAFSVGRKFGKEDESTSKTSKDNISVNEVSMSNIFPR* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3568 650 Pfam Domain of unknown function (DUF3403) 603 650 IPR021820 GO:0004674
Amo20g3568 650 Pfam Salt stress response/antifungal 37 132 IPR002902 -
Amo20g3568 650 Pfam Salt stress response/antifungal 154 244 IPR002902 -
Amo20g3568 650 Gene3D Transferase(Phosphotransferase) domain 1 518 610 - -
Amo20g3568 650 Gene3D Transferase(Phosphotransferase) domain 1 424 517 - -
Amo20g3568 650 PANTHER PROTEIN KINASE DOMAIN 22 647 - -
Amo20g3568 650 SUPERFAMILY Protein kinase-like (PK-like) 333 614 IPR011009 -
Amo20g3568 650 ProSiteProfiles Gnk2-homologous domain profile. 31 135 IPR002902 -
Amo20g3568 650 SMART serkin_6 348 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3568 650 ProSiteProfiles Protein kinase domain profile. 348 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3568 650 Pfam Protein kinase domain 350 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3568 650 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 22 647 - -
Amo20g3568 650 ProSiteProfiles Gnk2-homologous domain profile. 141 248 IPR002902 -
Amo20g3568 650 Gene3D - 30 135 IPR038408 -
Amo20g3568 650 Gene3D - 144 248 IPR038408 -
Amo20g3568 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Amo20g3568 650 Gene3D Phosphorylase Kinase; domain 1 319 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3568 Amo-Chr20 146136938 146143451 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3568 2 650 Receptor kinase-like Gene Family AT4G05200 38.495 2.47e-152 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo20g3568 Pkinase 6.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3568 - - ahf:112718031 1011.91