Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3563 ATGAAGAAGAAGCTAGACACCCGTTTTCCTGCGGCTCGGATAAAGAAGATAATGCAAACAGATGAAGATGTTGGAAAGATAGCTCTAGCAGTCCCTGTTCTAGTGTCTAAAGCTTTAGAGCTATTTTTGCAAGATCTTTGTAACCGCACTTATTCAATAACTCTCCAAAGAGGAGCAAAAACCATGACTTCACTGCATTTAAAACATTGTGTACAAAGCTATAATGTTTTTGACTTCTTGAGAGACATTGTTAGCAAGGTTCCTGACTATGGCCATGGCCATGGCCATGGTCATTCTGAAGGTGGGGTAGATGATCGTACCCTTCCAAAGAGAAGGAAAGCTGCTGGTGATGATTGTAATGACAGTGATGAAGAGGCTAAGAGGAGTAAGATGTATGAGTTAGGCCACACTGGTGGCACTGGTAGAGGAAGAGGCCGAGGCAGAGGACGAGGTCGTGGTAGAGGGGCTCGAACTGCTGAAAGAGAAGCGCATCATCATCAGCAAGTTGAATCTGAGCCTTGCTCCTCAGTTCAGCACCCTAGCAAAGACATTCCAAATACTGGCATGTCACTAGACAATTCTCCAGAATCCAAGGAGGTTCCAAAAGAGAACACTGCATGTCATGAGGAAAATAATCAATCTCTGCGTAACATTGATCTAAATGCTAACTTAAATGAGAGCGAGGAGAAGAATACAAGCATGGAAGCTCCGGCCTTGTTGCCTCCAGCCACTTTGCCGCCATCCAGTCTGCCTGAACCGGCAACAGAGATAAATCACGAGGAAATCCCTGGCTGGTCCCTTTCTGATGCGGACAAGATGGCCATTGACACTATGCAGCTTGCAAATCTCGGTAGTCGGATAGATGATGATGAGGATTATGATGAGGAAGGGTGA 894 0.4553 MKKKLDTRFPAARIKKIMQTDEDVGKIALAVPVLVSKALELFLQDLCNRTYSITLQRGAKTMTSLHLKHCVQSYNVFDFLRDIVSKVPDYGHGHGHGHSEGGVDDRTLPKRRKAAGDDCNDSDEEAKRSKMYELGHTGGTGRGRGRGRGRGRGRGARTAEREAHHHQQVESEPCSSVQHPSKDIPNTGMSLDNSPESKEVPKENTACHEENNQSLRNIDLNANLNESEEKNTSMEAPALLPPATLPPSSLPEPATEINHEEIPGWSLSDADKMAIDTMQLANLGSRIDDDEDYDEEG* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3563 297 SUPERFAMILY Histone-fold 3 90 IPR009072 GO:0046982
Amo20g3563 297 MobiDBLite consensus disorder prediction 91 265 - -
Amo20g3563 297 MobiDBLite consensus disorder prediction 91 132 - -
Amo20g3563 297 PANTHER HISTONE SUPERFAMILY PROTEIN 1 296 - -
Amo20g3563 297 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Amo20g3563 297 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Amo20g3563 297 MobiDBLite consensus disorder prediction 170 194 - -
Amo20g3563 297 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 296 - -
Amo20g3563 297 MobiDBLite consensus disorder prediction 153 169 - -
Amo20g3563 297 MobiDBLite consensus disorder prediction 207 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3563 Amo-Chr20 146073570 146080208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3563 1 287 CCAAT-HAP5 Transcription Factor Family AT3G12480 49.169 2.30e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Amo20g3563 CBFD_NFYB_HMF 1.2e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3563 K21752 - gmx:100810093 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3563 20 146073570 146080208 Amo20g3563 20 146073570 146080208 ECH