Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3561 ATGGCAGAAACTGCAGTATTGTTTGTTCTGAATCAAGTTCACCAGCTCCTACAAGAAGAATGGAATTTTCTGGCAAGTGGCCGTCAGGCATTCGCAGAGATTAAGGATGAATTGGATAGCATTCACGCCTTCCTCAGGGATGCAGATTTAAGGGCTGCAAATGGTGAAGCTAATGAAGGACTAAAGATTTGGGTGGCGCAGCTGCAAGAAGCATCGATTCGCATAGAAGATGTCATTGATGAATACATTCATGTGGCACAAAAGGTGTATCATCCTGGAGTTATGGCTTCAATCCAGAAGATTGTTCACTTCCTTGTGACTCTGAAGTCTCATTATCGGATATTATCTGAGATAGAAGACATTAAGTTAACAATTCGAGGAATCAAAGAAAGAAGTGAAAGGTATAACTTTCGGTCACCATTTGAACAACTAGGTTCAAGCAGTTCTAGAAGGATTGAAGCTGTCAAATGGTATGATCCTCGATTAGCTTCCCATTTCATTGAAGAAGCAGAAGTTGTGGGATTCGAATCTCCAAGAAACGAATTGGTTGATTGGTTAGTTGATGGACCAGTAGAGTGCTCTGTGATTTCAGTGGTAGGAATGGGAGGAATAGGAAAAACCACTCTTGGCAAGCTTGTTTTTGATAGCCAAGTGGTCAAAGTTCACTTTGATTGTCACGCCTTCGTGACAGTTTCTCAATCATACACGATAAGGGGTTTATTGATTGACCTGATAGAGCAGTTTTTCAAAGACACGCCTCTTCCTCAGAATATACAGAACATGGAGGAGAAGTCACTAATTACAAAAGTGAGGCAGTACCTTCAGCAAAAGAGGTATTTGGTTTTCTTTGATGATGTATGGAAACAAAGTTTTTCTGATGAGATTGAACTTGCCATGCCTAATAACAACAAAGGGAGTAGGATCATAATCACAACTAGAATGATGCATGCTGCTGAGTTCTTTAAGAAGGCTTTTCCTGTTCATGTGCACAATCTACAACTTTTGCCTCCTAATAAAACTTGGGAACTCTTCTGCAAGAAGGCATTTAGATACGAGCTCGGCCATAATTGTCCATCTGAGCTCATGGATGTGTCTCATGAAATCATTAAAAAATGCAACGGACTACCACTGGCAATTGTGGCCATCGGTGGTCTATTGTCGACGAAACCTAAAACTGTGTTCGAATGGAAAAAGGTGAGTCAAAATCTTAGTGTGGAACTAAAGCATAACTCCCATTTAACTAATTTGACAAAGATTTTATCACTGAATTTTGATGATTTGCCATACTATTTAAGAGCATGCATGTTGTATTTTGGTATATATCCAGAAGACTACTTCATTGGTCCTATGAGATTGACAAGATAA 1365 0.3963 MAETAVLFVLNQVHQLLQEEWNFLASGRQAFAEIKDELDSIHAFLRDADLRAANGEANEGLKIWVAQLQEASIRIEDVIDEYIHVAQKVYHPGVMASIQKIVHFLVTLKSHYRILSEIEDIKLTIRGIKERSERYNFRSPFEQLGSSSSRRIEAVKWYDPRLASHFIEEAEVVGFESPRNELVDWLVDGPVECSVISVVGMGGIGKTTLGKLVFDSQVVKVHFDCHAFVTVSQSYTIRGLLIDLIEQFFKDTPLPQNIQNMEEKSLITKVRQYLQQKRYLVFFDDVWKQSFSDEIELAMPNNNKGSRIIITTRMMHAAEFFKKAFPVHVHNLQLLPPNKTWELFCKKAFRYELGHNCPSELMDVSHEIIKKCNGLPLAIVAIGGLLSTKPKTVFEWKKVSQNLSVELKHNSHLTNLTKILSLNFDDLPYYLRACMLYFGIYPEDYFIGPMRLTR* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3561 454 CDD RX-CC_like 2 130 IPR038005 -
Amo20g3561 454 Pfam Rx N-terminal domain 5 88 IPR041118 -
Amo20g3561 454 Pfam NB-ARC domain 179 425 IPR002182 GO:0043531
Amo20g3561 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 438 IPR027417 -
Amo20g3561 454 Gene3D - 4 114 - -
Amo20g3561 454 PANTHER - 30 454 - -
Amo20g3561 454 Gene3D - 335 428 IPR042197 -
Amo20g3561 454 PRINTS Disease resistance protein signature 195 210 - -
Amo20g3561 454 PRINTS Disease resistance protein signature 372 386 - -
Amo20g3561 454 PRINTS Disease resistance protein signature 273 287 - -
Amo20g3561 454 Gene3D - 159 325 IPR027417 -
Amo20g3561 454 PANTHER DISEASE RESISTANCE PROTEIN RP 30 454 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3561 Amo-Chr20 146069442 146070806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3561 171 391 WRKY Transcription Factor Family AT5G45050 29.258 3.49e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3561 K13457 - gmx:100801561 582.022