Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3558 ATGGGAGGAGAGAAGAAGAGAATAGAGAAGCAGAAGAAGAAGTCAAAATCATCAGGGGGATTCGAATCTCTGAATCTAAACCCCAATGTATTCAAAGCAATCAAACGCAAAGGCTACAAAGTCCCCACTCCAATTCAAAGGAAGACGATGCCTCTCATCCTCTCCGGCCACGACGTCGTCGCCATGGCCCGCACTGGTTCCGGCAAAACGGCAGCGTTTCTTGTCCCAATGCTCCACCGCCTCAACCAGCATGTCCCTCAGTCCGGTGTTAGAGCCCTCATATTGTCCCCTACAAGGGACTTGGCTCTTCAAACCCTAAAATTCACCAAAGAGCTTGGTCACTTCACTGATCTTAGGGTTAGTTTGTTAGTTGGCGGTGACAGCATGGAGAGCCAGTTTGAGGAACTGGCTCAGAGCCCTGACATTATAATTGCCACACCTGGTAGGCTTATGCACCATTTGTCTGAGGTAGATGACATGTCGTTGCGTACCGTTGAGTATGTTGTTTTTGATGAGGCTGATTGTTTGTTTGGGATGGGTTTTGCTGAGCAGTTGCACCAGATTCTTTCGCAGCTCGGCGAGAATCGCCAGACGCTGTTATTTAGCGCTACTATGCCCAGCGCGCTCGCAGAGTTTGCGAAGGCCGGCCTGCGAGATCCTCAGCTTGTGAGGCTTGATTTGGAGACTAAAATTAGCCCTGATTTGAAGACTGTGTTTTTTACTTTGAGACAGGAAGAGAAGTATGCTGCATTGTTGTATTTGGTTAGGGAAAGGATTGGTTCGGATCAGCAGACATTGATTTTTGTATCCACAAAACACCATGTTGAGTTTTTGAATATACTGTTTAGAGAAGAAGGGATTGAACCATCTGTGTGTTATGGTGACATGGATCAAGATGCCCGAAAAATACATGTATCAAGGTTTAGGTCGAGGAAGACGATGCTGTTGATTGTGACGGATGTTGCAGCTCGTGGCATTGATATTCCTTTGCTTGATAATGTTATCAATTGGGACTTCCCTCCAAAGCCTAAGATATTTGTTCATCGTGTTGGAAGGGCTGCAAGGGCTGGCCGTACCGGCACTGCTTATTCCTTCGTGACATCGGAGGATATGGCTTACCTATTGGATCTTCATTTGTTTCTGTCGAAGCCGATAAAAGCTGCTCCCACCGAAGAAGAGGTCTTGCAGAATATGACTGGAGTAATGTCGAAAATTGAACAGGCAATGGCAAATGGAGAAACTGTTTATGGCCGATTCCCTCAAACAGTCCTTGACCTTGTTTCAGATAGAGTTAGGGAAATTATTGATACTAATGCAGAATTGGAGTCATTGCAGAGAACCTGTAACAATGCATTCCGTTTATATATGAAGACGAAGCCCTTACCATCCAAGGAGTCTATTCGAAGAGTAAAGGATTTGCCACGTGAGGGTCTGCATCCGATGTTCAAGAATGTATTGGAAACTGGGGAGTTAATGGCCCTTGCATTTTCAGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACTATCTTGGAAGCTGAAGGGGAAGCAGCTAAATCAAAGCATGTACAGGGTCCTTCCGGTCAATGGGTTGATGTGATGAAAAGGAAGAGAGCCATTCATGAGAATATTATAAATTTGGTTCATGAACAGCAGTCTAAAAGTACTATAGAAAAGGAGGAAATTCAACCAGAAGATATTCCTTCCACAGAAAAAGGGAGAAAAGCATCTGGTTCTAAGAGAAAGCAACAGTGTTTCATGGATGAGGAATACTATATAAGTTCAGTACCTAAAAATCAACACATGGAGGCTGGCCTTTCTGTGAAAGCTAATGAAGAATTTGCCGCAAACAGATTGGATTCTGCTGTTTTAGATCTGGTTGCAGATGATAGTACTGGCATTCAGAAACAAAGATCTGTATATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAATAATGGTGACCGTGTTGCAGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACAAAGGCCACCAAGACAGGCATATATAAGAAGTGGAAAGAGCGCTCACACACTAAGGTATCTCTTAAGGGGACAAATAATGATGGTGATGCTCAAGAATCCACAAGTTTTAAAGGATCTTACAGAGGAAGAGGTAGGAATTTCAAAGGCGGCAGTAAGAGGCAGCAATCAATGCCCAATTCTCATGTTCGTTCAGAGATCAAAGAATTTGATCAAATTCGAAAGGAGAGGCAGAAAAAGGCAGACAGGATTTCACATTTGAAGAGCAAGTCAGCAAAAGGTAAAAAATTTGGTAAAAATGGAAAGAAAAGAAGAGCTAAATAG 2337 0.4326 MGGEKKRIEKQKKKSKSSGGFESLNLNPNVFKAIKRKGYKVPTPIQRKTMPLILSGHDVVAMARTGSGKTAAFLVPMLHRLNQHVPQSGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHQILSQLGENRQTLLFSATMPSALAEFAKAGLRDPQLVRLDLETKISPDLKTVFFTLRQEEKYAALLYLVRERIGSDQQTLIFVSTKHHVEFLNILFREEGIEPSVCYGDMDQDARKIHVSRFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTSEDMAYLLDLHLFLSKPIKAAPTEEEVLQNMTGVMSKIEQAMANGETVYGRFPQTVLDLVSDRVREIIDTNAELESLQRTCNNAFRLYMKTKPLPSKESIRRVKDLPREGLHPMFKNVLETGELMALAFSEHLKKFRPKQTILEAEGEAAKSKHVQGPSGQWVDVMKRKRAIHENIINLVHEQQSKSTIEKEEIQPEDIPSTEKGRKASGSKRKQQCFMDEEYYISSVPKNQHMEAGLSVKANEEFAANRLDSAVLDLVADDSTGIQKQRSVYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGIYKKWKERSHTKVSLKGTNNDGDAQESTSFKGSYRGRGRNFKGGSKRQQSMPNSHVRSEIKEFDQIRKERQKKADRISHLKSKSAKGKKFGKNGKKRRAK* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3558 778 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 234 396 IPR001650 -
Amo20g3558 778 MobiDBLite consensus disorder prediction 550 580 - -
Amo20g3558 778 CDD SF2_C_DEAD 242 366 - -
Amo20g3558 778 SMART DBP10CT_2 624 686 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Amo20g3558 778 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 4 775 - -
Amo20g3558 778 SMART helicmild6 276 357 IPR001650 -
Amo20g3558 778 MobiDBLite consensus disorder prediction 693 712 - -
Amo20g3558 778 Pfam DEAD/DEAH box helicase 43 210 IPR011545 GO:0003676|GO:0005524
Amo20g3558 778 Pfam Helicase conserved C-terminal domain 247 357 IPR001650 -
Amo20g3558 778 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 4 775 - -
Amo20g3558 778 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 375 IPR027417 -
Amo20g3558 778 Gene3D - 3 226 IPR027417 -
Amo20g3558 778 MobiDBLite consensus disorder prediction 552 580 - -
Amo20g3558 778 MobiDBLite consensus disorder prediction 687 778 - -
Amo20g3558 778 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 19 47 IPR014014 GO:0003724
Amo20g3558 778 MobiDBLite consensus disorder prediction 735 759 - -
Amo20g3558 778 SMART ultradead3 38 239 IPR014001 -
Amo20g3558 778 Pfam DBP10CT (NUC160) domain 624 685 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Amo20g3558 778 MobiDBLite consensus disorder prediction 1 21 - -
Amo20g3558 778 MobiDBLite consensus disorder prediction 760 778 - -
Amo20g3558 778 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 223 IPR014001 -
Amo20g3558 778 Gene3D - 236 471 IPR027417 -
Amo20g3558 778 CDD DEADc_DDX54 19 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3558 Amo-Chr20 146031936 146037005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3558 21 390 Eukaryotic Initiation Factors Gene Family AT1G72730 32.527 4.61e-59 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3558 K14808 - gmx:100806274 1283.09