Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3554 ATGTTTCCTTCCACTACTTACAGTTACAGCACTGGCCCTTACCCTTGCTTCCCTTCATCTTCTTCTTCATATCCTCTTTTTCCTTTTCTGAACCCTGAGAACAATGCTTCTTCTTCTTCTGCAACAACCGCCACTAACAACAACAACAATAATCTCCTTCATGATCCATCGCTCTGCGTTCCTTACATTCCAATCCCTGAAGCACTAACCAATTTGGCAACAGTTGTAGATAACACTACTAATCTTGCTGCATCTTCATCAATGCCCAAACAACAGGACCTCAACGGTGGCGGTGGCGGAGGTGCTCATCATCACTTCGGCATATCCAGTTTGCTCACGAAGAAACCGGCGGCGGCGAAGAAAGATAGGCACAGCAAGATTTACACTGCTCAGGGGCTGAGGGACCGAAGGGTGAGGCTGTCGATTGAGATCGCGCGCAAGTTCTTCGATCTCCAAGACATGCTAGGGTTTGATAAGGCCAGCAACACGCTCGACTGGCTCTTCACCAAGTCCAAGAAAGCCATTAAGGAGCTTGCCAGGAGCAAGAACCACAGCGCCAGTGACGAAGCCGAAGCCAAAGCCGGTGCCGGTGCCGGTGCCAATAACAAGAGTTTCGCCTCGTCCTCTGACTGCGAAGAAGATGACTTTGAAGTACTTTCTAGAAACAACCACCACCGCCACCAACAAGGGTCAGATGCCAGGGAGAGGAAGCTGAAAAATGCACAACAGAAAGAAGCAAGTGCTTGTAATGTGAGGGCAAAGATGAAGGAGTCAAGGGAGAAAGCAAGAGCAAGAGCAAGAGAAAGGACTAGTAACAAGATGTGTAACAGCATAATGGGAAATTCTTCTTCTTCTTCCGGGAAGGTTCTAGAATTAAAGAAAAGATGCCCTGCACCTAGTGAAAACCCTCACCACCTAGGTGGTGCTGAAGTTTCACAAACTAGAGATGACTTCAACGTTATTGAGGAATCCATTGTGATCAAGAGGAAGTTGAAGCAGCCATCTATGATGTCATCCTCACATCACCATCACCATCACCACCACCAATTAAACCTTCCCGTCCCTAACAATAATAAGGAAGCAAGTTTCAACAACAACAGCGATAATTACCATCCAGGAAACTACACCAATTTGTCACCAAATTGGGATAATGCTAATGGACCAGCCTCAACGGCTAATAACCGCTCCAACTTCTGTGCAATAGCCAGCATGAATCTCTCTACAGGGCTACAAATCTTTGGAAAGTCATGGGAGGAATGCACCAATCCATCACGTCTGCACTAG 1284 0.4696 MFPSTTYSYSTGPYPCFPSSSSSYPLFPFLNPENNASSSSATTATNNNNNNLLHDPSLCVPYIPIPEALTNLATVVDNTTNLAASSSMPKQQDLNGGGGGGAHHHFGISSLLTKKPAAAKKDRHSKIYTAQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELARSKNHSASDEAEAKAGAGAGANNKSFASSSDCEEDDFEVLSRNNHHRHQQGSDARERKLKNAQQKEASACNVRAKMKESREKARARARERTSNKMCNSIMGNSSSSSGKVLELKKRCPAPSENPHHLGGAEVSQTRDDFNVIEESIVIKRKLKQPSMMSSSHHHHHHHHQLNLPVPNNNKEASFNNNSDNYHPGNYTNLSPNWDNANGPASTANNRSNFCAIASMNLSTGLQIFGKSWEECTNPSRLH* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3554 427 MobiDBLite consensus disorder prediction 180 208 - -
Amo20g3554 427 MobiDBLite consensus disorder prediction 222 257 - -
Amo20g3554 427 ProSiteProfiles TCP domain profile. 120 178 IPR017887 -
Amo20g3554 427 MobiDBLite consensus disorder prediction 222 242 - -
Amo20g3554 427 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 23 425 - -
Amo20g3554 427 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 23 425 IPR005333 GO:0003700
Amo20g3554 427 Pfam TCP family transcription factor 119 276 IPR017887 -
Amo20g3554 427 ProSiteProfiles R domain profile. 256 273 IPR017888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3554 Amo-Chr20 145939645 145942060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3554 118 275 TCP Transcription Factor Family AT1G67260 43.713 3.47e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo20g3554 TCP 7.1e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3554 - - gmx:100801549 332.798