Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3546 ATGAGTGAAACCACAACTCCTCCTCCAACCACTAGCGACTTTGGAATTGGACAAGAACAACTGATTTCGTTATCAACAGAGCAAAGTAGTGCTGCTCTCGAGCTCTATGGAGGGGTTGTAGGGATATCGAATTTGCTGAATACCAGTTTAGAGAAGGGAATTCATGGTGATGAGGCTGATTTATTAAGACGAAGAAGGGCTTTCGGTTCTAACAATTATCCTCGAAGGAGAGGAAAAGGTTTTCTGATATTTGTATGGGAAGCTTGCAAAGATCCTACCTTGCTTATTTTACTGGTATCTGCAGCGATTTTATTGGCATTAGGGATAAAGTCTAAGGGTGTCAAGGAAGGATGGTACGATGGGGGAAGCATAGCTTTTGCTGCTTTTATTGTCATTGTAGTTACAGCCATGAGTGAATACAGGCAGTATGTTCAATTTCACGACACAAATGAAAAGAAGAGAAATATACACCTAGAGGTGATTAGAGGCGGGAGAAGGGTTAAGATCTCAATTTATGATATTGTCGTTGGCGATGTTATACCCCTTAATACTGGTGACCAGGTCCCAGCTGATGGAATTCTAATCACTCCTCACCCTCTTGCAATTGATGAATCAAGCATTCATGGGGAGAGCATAATTGTTCATAAAGATTCTAGGGCCCCTTTCTTGATGTCTGGATGTAGAGTTCAAGATGGTAGTGGCACTATGCTGGTAATAGGTGTTGGCATTAATACTGAGTGGGGTTTACAAATGGCTATTTCTTCAGATGACCCAATTGAAGAAACACCTTTGCAGGCTCGTCTAAATGGTGTAGCCACCTTTTTTGGTATTGTTGGTCTCTCTGTCACAGCTGTTATTCTGACGGTACTGCTGGCCAGATACTTCACTGGCCATACCAGAAACTTAGATGGGAATGTTCAATTTATAGCGGGCAAGACTAGAGCTGTTGATGCTATACATGGAGCAGTTAGCATAGTAACAATTGCGGTCACCAGTATAGTGGTTGCAGTACCTGACAGCCTCCCATTAACAGTCAACTTCACGTTAGCCTTCTCATTAAGGAAACTGATGGCATCTAAGATTTTGGTGAGGAAGCTTTTTGCTTGCGAGATGATGGGCTCTGCCACAGTTATTTGTAGTGACAAGACTGGTACATTGACTATGAATCAGATGATTGTGGTTGAGGCATATGCTGGTGGTAGAAAAATTGATCCTCCTAGCAACGGGTTAAGAATCTCTCCCAAGCTCCAATCGTTGCTCATTGAAGGTGTTGCACAAAACACTAATGGCAATGTTTACTTACCTGAGGGTTGCACTGGTATTGAGATTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGGAGTACAGATTGGGATGGATTTCGAGGCTGCCAGATCAGAGTCTTCAATTATTCACATGTTTCCTTTCAATGCAGAGAAAAAACGTGGCGGAGTTGCAATACAGAAGGCTGACCATGAAATCCACATACATTGGAAAGGTGCTGCTGAGATAATTCTTGCTCGTTGTACATGGTACTTGGATACAAATGACCATTTGATGGAGATGAGTGGAGAGAAGGTATGCTAA 1593 0.4237 MSETTTPPPTTSDFGIGQEQLISLSTEQSSAALELYGGVVGISNLLNTSLEKGIHGDEADLLRRRRAFGSNNYPRRRGKGFLIFVWEACKDPTLLILLVSAAILLALGIKSKGVKEGWYDGGSIAFAAFIVIVVTAMSEYRQYVQFHDTNEKKRNIHLEVIRGGRRVKISIYDIVVGDVIPLNTGDQVPADGILITPHPLAIDESSIHGESIIVHKDSRAPFLMSGCRVQDGSGTMLVIGVGINTEWGLQMAISSDDPIEETPLQARLNGVATFFGIVGLSVTAVILTVLLARYFTGHTRNLDGNVQFIAGKTRAVDAIHGAVSIVTIAVTSIVVAVPDSLPLTVNFTLAFSLRKLMASKILVRKLFACEMMGSATVICSDKTGTLTMNQMIVVEAYAGGRKIDPPSNGLRISPKLQSLLIEGVAQNTNGNVYLPEGCTGIEISGSPTEKAILHWGVQIGMDFEAARSESSIIHMFPFNAEKKRGGVAIQKADHEIHIHWKGAAEIILARCTWYLDTNDHLMEMSGEKVC* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3546 530 PANTHER CATION TRANSPORTING ATPASE 11 525 - -
Amo20g3546 530 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 319 402 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo20g3546 530 Gene3D - 157 237 - -
Amo20g3546 530 SUPERFAMILY Calcium ATPase, transduction domain A 157 248 IPR008250 -
Amo20g3546 530 PANTHER CALCIUM-TRANSPORTING ATPASE 9, PLASMA MEMBRANE-TYPE 11 525 - -
Amo20g3546 530 Pfam E1-E2 ATPase 157 357 - -
Amo20g3546 530 SMART Cation_ATPase_N_a_2 38 109 IPR004014 -
Amo20g3546 530 Pfam Cation transporter/ATPase, N-terminus 38 103 IPR004014 -
Amo20g3546 530 SUPERFAMILY Calcium ATPase, transmembrane domain M 38 373 IPR023298 -
Amo20g3546 530 PRINTS Sodium/potassium-transporting ATPase signature 498 516 - -
Amo20g3546 530 PRINTS Sodium/potassium-transporting ATPase signature 122 142 - -
Amo20g3546 530 PRINTS Sodium/potassium-transporting ATPase signature 372 393 - -
Amo20g3546 530 PRINTS P-type cation-transporting ATPase superfamily signature 203 217 - -
Amo20g3546 530 PRINTS P-type cation-transporting ATPase superfamily signature 379 393 - -
Amo20g3546 530 Pfam Cation transport ATPase (P-type) 442 512 - -
Amo20g3546 530 Gene3D - 433 529 IPR023299 GO:0000166
Amo20g3546 530 Gene3D - 238 399 - -
Amo20g3546 530 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 385 526 IPR023299 GO:0000166
Amo20g3546 530 ProSitePatterns E1-E2 ATPases phosphorylation site. 381 387 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3546 Amo-Chr20 145784772 145803125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3546 1 528 Primary Pumps ATPases AT5G57110 61.437 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3546 K01537 - gmx:100792945 744.962