Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3545 ATGTTCACTGGTGACAACATCAATACTGCCAAAGCAATTGCTTTGGAATGTGGAATACTATCTTCCTTTGATAATGCTATAGAACCATGTGTCATTGAGGGAAGAGAATTCCGTGCCTTAACAGATGAACAAAGAGAAGAGATAGCTGAAAAAATAGTTGTTATGGGACGGTCAAGTCCTAATGACAAGTTATTACTTGTGGAAGCGCTCAGAAAGAGGGGACATATTATCGCTGTAATTGGGGATGGAACAAATGATGCTCCGGCACTATATGAGGCCGATGTAGGTCTTGCCATGGGTATACAGGGCTCACAAATTGCAAAAGAAAGCTCTGATATCATACTTATGGATGACAACTTTGCTTCAATTTTGAAGGTTGTGAAATGGGGTCGATGTATATATGCTAACCTACGGAAATTTATCCAATTTAATCTTACAATAAGTGTGACAGCTCTTCTTATAAATGTTGTTACTACACTCTCTTCTGGTGATATCCCACTAAATGCTGTGCAGCTTCTGTGGGTAAATCTTATCATGGATACTCTAGGAGCACTAGCATTGGCAACTGAACAACCAACGAATCTCCTGATGAATCTACCTCCAGTAGGCCGAAGAGAACCGTTAATCTCAAATACTATGTGGAGGAACATATTGATACAGGTAGTATATCAGGTGTCTGTCTTGCTCGCTCTAAACTTTCAAGGTAGCATTCCGGGTTTCACACATGATGCAACTGATCATGGGATTAAATTGAAGAAAACATTGATCTTCGATGCATTTGTACTATGTCAGATCTTCAATGAATTTAATGCAAGGAAGCTAGATGAATTCAACATATTTAAAGGAGTCACGAGAAACTACCTCTTTATGGGAATAATAGGCTTGACAGTTGTGCTTCAGTTTATCATCGTTGAATTCCTCGGAAAATTCACTTCCACAGTCAGGCTTAATTGGAAGCAGTGGTTCATCTGTGTCATTATTGGCTTTATTAGTTGGCCTCTTGGTTGTTTTGGGAAATTGATACCAGTGCCACACACTCCCATCAATAATAAATTTAGAAGAATTCTTCATGGAAGAACTCAAATGCAAAGTGGTCAGAGTACAACAGGAGAAAGACCGTACTCAAAACTAGTTATATGTTGCTATTTGATTGTAAATTTATTTTCAAGATTTCAACGTCGAAGAACATCAACGCACCAGGTTCTATACTGTAGTGCAGTCACATGTTTTGTTTATTATCAAGATTTTCAAATCAACCGTTAA 1263 0.3824 MFTGDNINTAKAIALECGILSSFDNAIEPCVIEGREFRALTDEQREEIAEKIVVMGRSSPNDKLLLVEALRKRGHIIAVIGDGTNDAPALYEADVGLAMGIQGSQIAKESSDIILMDDNFASILKVVKWGRCIYANLRKFIQFNLTISVTALLINVVTTLSSGDIPLNAVQLLWVNLIMDTLGALALATEQPTNLLMNLPPVGRREPLISNTMWRNILIQVVYQVSVLLALNFQGSIPGFTHDATDHGIKLKKTLIFDAFVLCQIFNEFNARKLDEFNIFKGVTRNYLFMGIIGLTVVLQFIIVEFLGKFTSTVRLNWKQWFICVIIGFISWPLGCFGKLIPVPHTPINNKFRRILHGRTQMQSGQSTTGERPYSKLVICCYLIVNLFSRFQRRRTSTHQVLYCSAVTCFVYYQDFQINR* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3545 420 SUPERFAMILY HAD-like 1 185 IPR036412 -
Amo20g3545 420 SUPERFAMILY Calcium ATPase, transmembrane domain M 130 343 IPR023298 -
Amo20g3545 420 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 46 160 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo20g3545 420 Pfam Cation transporting ATPase, C-terminus 165 340 IPR006068 -
Amo20g3545 420 PRINTS H+-transporting ATPase (proton pump) signature 112 137 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo20g3545 420 PRINTS H+-transporting ATPase (proton pump) signature 80 96 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo20g3545 420 Pfam haloacid dehalogenase-like hydrolase 1 94 - -
Amo20g3545 420 PRINTS P-type cation-transporting ATPase superfamily signature 80 99 - -
Amo20g3545 420 PRINTS P-type cation-transporting ATPase superfamily signature 104 116 - -
Amo20g3545 420 Gene3D - 1 125 IPR023214 -
Amo20g3545 420 Gene3D - 126 330 - -
Amo20g3545 420 PANTHER CATION TRANSPORTING ATPASE 1 355 - -
Amo20g3545 420 PANTHER CALCIUM-TRANSPORTING ATPASE 1 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3545 Amo-Chr20 145775994 145782023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3545 1 368 Primary Pumps ATPases AT5G57110 67.568 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3545 K01537 - gmx:100820121 547.74