Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3527 ATGGAATTTCTTGTGGCATTAGCAACTGGAGTTGTGACAAAACTTGGGGAGTCATTAGTAGCACCAATCACAAACCAATTTGCATACATAATCCGCTACAAAAGAAATGTGAAGAATTTGGAGAGCCAGATGAAGGAATTGGAAGGCAAGAAACTTGGAGTGCAAGCAACTGTGGATGCAGATAAAAGGAATTCACATCAAATTGCATCTAATGTTGAAGATTGGCTTTGCAAGATAGACACAATTGAGAATGAATTACAAGGATTCTATGAAGATGATGAACAAGTGAAAAACAAGTATCTGAATTTGGTGTCATGTTATTCATTGAGCAAGAGAGCCAAAAAATTAACCAATGATATTATGAGGCTCAAGGAAGAGAAATTTGAAATCATATCTTACCCTAAACCCCCACCAAGACTTGGATCAAGATTCTTGAATGGTACTACTATTAAGAGCTTCCAAACAAGAGAATCAATCATGTGTGAGGTCATAGATAAATTGAAAGATGAAGATGTGAATAGAATTAGCATATGTGGAATGGGTGGTGTTGGAAAAACCACCTTTGTGAAAGAAGTGATCAAGATTTTAGAGGCAGATAAGTCTTTTGATGAGGTTGTCATGGCAGTGGTGTCTCAAACTCCAGATTGCAGGAAGATCCAAGGTCAGATTGCTGATGCCATTGGATTGAAGCTTGACAAGGAAACTGATCAAGGAAGAGCTCTTCAACTGCATGATCGATTGAAGAATATAGATAGTGTTCTGATAGTGCTAGATGATGTTTGGACAGACCTTGATTTTGAATCAATTGGCATTCCTTCCACAAGTTGCAAGATCTTATTCACTTCAAGAATCCAAGATGTGTGCATCAAGATGAAGAGTCAAAGGAATTTCACAGTTTCTGTCTTGTCCCGAGACGAAAGCTGGGATCTTTTCAATGAGACTATTGGAGTTAATCTTGCAGAGAAACCTGACATCCATGACATAGCAAAAGAAATTGCAAACCAATGCAGGGGATTGCCTATTGCGATTGTAACAATAGCGAAAGCATTGGCAAATAAAGAGAAGCATGCTTGGGAGGATGCATTGGAGCAACTGAGGAATTCAACAGTAGAATCTTTTCCTGAAATGCAGACTAGTGTCTTTTCTTGCATTGAGCTAAGTTACAACTTTCTTGGTGGTGAAGAAAAGTTCTTCCTTTTCCTCTGTTCCTTATTACCAGAAGACTTTGACATTCCCATTGAAGTCCTATTCAGACATGGTGTGGGATTAGGAATGTTCAAAGGCATTGATGCTTTGTGGAAAGTTAGAAACCGGGTGCATACAATCGTCGATAGACTAAAAGAATGCTTCATGCTGTTGGATAGCAATGTGGAAGAGTGTGTTAAAATGCATGATGTTGTTCGCGATACTATCGCCTCTGTAGCAGCAAAATATCATCATCATTTGGATTGTTATAGCAGTGCAATCTCACTAATCTTTGAGAAGAAAACAGAACTTCTTCATGTTTCAAATTGTCAAAAGCTGAAGCTTTTACAAGTATCATCAAAGGGAAAGGAATCTGTTCCAGAGAATTTCTTCCAAGGCATGAACAAACTCATGGTACTGAGTCTGCAAAATGTGTTGATTCAATCTATGCCTTCTACACTTTCAGCTTTGGACAACATCCACACTCTAAGATTAGAAGCTTGCAATGTTGGAGACATATCGATAATTGGCCAGAAACTCATGAAATTGGAGATTCTAAGCTTTGCTAAATCAAGTATCAAGGTATTGCCATTAGAAATTGGGCAACTAACTTTGCTAAGATTGTTGGATTTAACTGAATGCAATCATCTTATTCAAATTTCTGCTACTGTTTTGGCAAGCTTATCTAGGCTAGAGGAACTCTATCTTAGAGTAAGAAATTTTCCTTCAAAGGAATCTAATCATATCCTCTTTGAGTTGCAATGCTTATCTCATCAGCTAAAAGTTCTTGAGTTTGCATTTATTATGGTAGATGAATTTCTTCCCAAAGACTTAATCTTCAAAAACATTGTAAGGTTTTGGGTCTATGTGGGAGATTCATCTACCATTTCCCATGGTCTTGTTCCTAGGGGATACCTACACCCAAATGTGCTGACATTAAATAACACATATTACAGTTACATCAAGAAGAGTGTGACCATTCAACATTTTCTTCAAAGAGTTGAAATTCTCAGCTTAGATGATATCAAGAACTTAAAATGTGTCATATCAGATTTAGATGAAGAGGGATTTCCACTTCTGAAAAATCTGATCATTGAGTCCTGCAACAATTTAGAGTATGCTGCAGATTCATGTGATGATCATTGTGTTTTTCCACAAGTTCAATCAATTTCTTTGAGGAATTTGGAGAATTTAAAAGCAATAATATGTCATGTGGCCCATCATTTGTGTCAAAAGGTTGAAGTTAGTGCATGCCAATGCTTTGGAAGCCTACAAGTTCTTAAAATAGAATATTGTAAAAGTTTGAAGACCATCTTCACATTATTGTTTCCAAGGAGAACTACTAGTTTGGCCAAACTTCAATGCTTGCATGTGGTTGAAAGCCATGGAATAGAATGCATTGTTTCAATCAATACAATCAAAGTTGATGACTCAATTATTGTGTTTTCTAATTTGGTGGAATTGAAGCTGCAAGAACTTCCAAATTTGACTGCATTCATCAAAACTAGTATTATGCATCAGCACCATTCACCTTATAAGGTTCAAGAATCCAATACATTACTTGAAAACTTTATTGAACATGATCAAGAGTTTTTGGGTGAAGATATGTTCATTGGTTCTGCACTTTTTGAATCTAATTCATTGCAATTGTTTCCAAAGTTAGAGAAAATTTTGCTACGGGCATGTTCATCATTAAACATAGTTTTTGATATGAAACCATCACAATTAGAAGATCAACATGTGGATAATGCTGCATTTTTTGCTCAACTAAAAGAGCTAGAGTTATCATGGCTTAATAATCTAAACCACATTTGGGGTTCTGTTCCAAGCAACATTCAAGGCTTTCATAAACTGAAATCAATCAAAGTTGCAAACTGTGATTCTTTGAAATATATATTTACTCCAAGCATTGTAAGAGCTCTTACTCAACTTGAGAAATTGGTGATACAAAGTTGCATGTCCCTAGAGAAATTTGTTGGGAATGAACAAGGCCAAAATGTGGAAACCCTTGTGTTTGTTCAGTTGGAATCTTTAACACTTAAGGATCTTCCACAGCTTGTGAATTTTGGTCCAAATTCTTACATGATATTGTGGCCAGCTATGAAGTCTTTATGCATTGATGGTTGCCCCTTGCTCAAGGCATCTAATGTATGTGTACAAGAAGAGAATTTCAATGTCATATCCAATTCAATAACATCCCATGATGTTGGAACTACTACTTCTATGGAAGATTCTCCTAGTCTGAGGTTTCTTCAATGTTGTTTTGGAGGCACAAAGGAATTGTTAGTTTCCAATTCAAAGGCAAAGGCTTTGAAAATGGAGGAAGGTGTTGTTGATGCTAAGGAAATCAATTTCTTCAATGAAATGGGAGGATCTCCAATGCCAATTTTGGAACATGTTATAATAAAAGGATGGGATTCCCTAGATGTCTTGTTTCACCTTAAACAAAGTGAAGATTCTAATAATACCATTGTTGTCAATTGTTTGGTGAAACTTATGACAATGCAATTACCATCAAGCCCTTTAGGTGTCATTGCATTCAATAACATCACTCTCTTAAGTTTAGAAGGTTGTCATAGATTGAGATATATATGCTCATATTCCATAGCAAAGCTTCTTGTCAAGTTACAAGAAATAAAAGTATCAAACTGTAAGGTTGTTGAGCAATTATTCCAAAGTGAAGAGCATGAGATTTGTGTTGATTATTTAGAATGGCCATCATTGAAGAGAATTAGCGTCATCAATTGTAGCATGCTTGAAGTTGTGATTAGTAAAGTGGAAGAAGGGAAGATAAATAGTTTCATCATCACCTCATTTGCTCAATTACAGTCTCTTACACTGACCCATTTACCAAATGTTATAAGCTTTTGCAATAATACATTTTTGGAGAATGGCCATGGGAATGAGTATTTCAAACAAGATCATGAGAGAGCAAGTAGTAGTGAGGAAGAAAGAAACACAAGGCTTGATGCTCCACTCATAAATGGGTTCCAATTTCCAAACCTAAGACACATAGCAATAATGGGATGCAACAAAATGAGTTGCTTGTTCTCTCCTTCAACTTCAAAAAGCCTTGTTCATTTGCAAGTTCTAGAGATATGTGGCTGTGGAGACATAGAAGAAATAGTATCTTTTGAAGACACTAATAAAGTGATGAGTGTAATAAGTAATAAGTTTGTGTTTCACAACTTGCAGCATCTAAAACTTGAAAATCTACCAAAGCTCAAGGCCTTTTGCAAGGGTTCTTATGACTTTGATTTTCCATTATTACATGAAGTATTCTTAAAAAATTGCCACATGATGGAGATATTTTCATGTGGGTCTTCATACACTCCAAAGTTGGATAAAGTAACCATGGAAATTGGAAATGTTGCCAAGAACATATGGATGGGAGATCTAAATGCTACTATGCCACTATGTAAAGGAATGTTGACATTTCAATCCTCAGAAACACTTAGATGGATCAAGCAACATTCATGGGCACTAAGATACTTGACCAAAGAAAAGGAGTTGACTATTGAAGGTTTTCAAAGGCTTCTAAATCTTGTTCCCTCCAATGTGATGCACCTCTTTCAAAACCTAAATCAACTCACAATTAAAGATTGTGATTCACTAGTAGAGGTGTTTGAATCACAAGGAATAATAATGATGAACAAAAAAGAAGTCACAAACTATGAGTTACAATCAATGAGCTTGCAACATCTTCCAAAGTTGACCCACATATGGAGATTTCATGGTGGTGTTTTGGGATTCAAAAAGCTAAGAGTACTCAAAGTTGAACATTGTGGCAGTTTGTGTAGCTTGTTTTCTCCATCCATGGCCAAAAGCCTAGTGCAACTTTGGCACCTAAGATTGGAGCTTCGTCATCTTACTAACTTCAAGTGTTTTTCCTCCCAAAGAAACTTAGATATTGAACTTCCTTCTTGTGAAGAAATGGTGATTGAAAAATGTCCAAATATGACAAGCTTTTGCTATGGAGATGTTAAAACACCAAAGCTTCTTCAGATATATAAAGGTTCATATGAGTATGTTGACTTGATGGTTGACCTTAATGCCACCATCCATTGTGCTAATAAGAACTTCAAGGTTCCACAACAAACCTTAGAGAGAAGCAGATTCATAGAGCAAGATCATCATCTCCTTGATTACTTAAGAAGTCAAACAGAGCTGTTTGTTGAAGATAGTGAAACACTGTTGCATTGTGTTCCATTCAACATGTTTCATAGGTTCCAACACATAAAACAACTTAAGCTACATCTTTATGCTCTTCCCAAGTTGATGCACATATGGAGAGAAAACCATGGAAGAATCTTAACCTTTGGAAATCTTAGAAAGCTAAAGATTGGATTTTGTGGCGGTTTGAAAAGCCTGCTTTCTCCTTCCATAGCTAGAGGCCTTTCTCAACTCCAAGAGTTTTCAGTACATGAATGTGAGGAGTTGGAGAAAATAATCAGTGATGAAGAATCAATCCACAATGTGAAGATTATTGAATTCCCATCATTGCAATGGTTAACTCTTTATCAACTTCCAAGCCTTGGGTGCTTTTGTTCAAGTTCTTATCATTTTGAGTTACCATCCTGCCATGACATAATTATCAAAGAATGCCCCAAAATTGAAGCTTGTTGCAAAGGAATAACCAAAACTTTCCAAAATTGA 5841 0.3621 MEFLVALATGVVTKLGESLVAPITNQFAYIIRYKRNVKNLESQMKELEGKKLGVQATVDADKRNSHQIASNVEDWLCKIDTIENELQGFYEDDEQVKNKYLNLVSCYSLSKRAKKLTNDIMRLKEEKFEIISYPKPPPRLGSRFLNGTTIKSFQTRESIMCEVIDKLKDEDVNRISICGMGGVGKTTFVKEVIKILEADKSFDEVVMAVVSQTPDCRKIQGQIADAIGLKLDKETDQGRALQLHDRLKNIDSVLIVLDDVWTDLDFESIGIPSTSCKILFTSRIQDVCIKMKSQRNFTVSVLSRDESWDLFNETIGVNLAEKPDIHDIAKEIANQCRGLPIAIVTIAKALANKEKHAWEDALEQLRNSTVESFPEMQTSVFSCIELSYNFLGGEEKFFLFLCSLLPEDFDIPIEVLFRHGVGLGMFKGIDALWKVRNRVHTIVDRLKECFMLLDSNVEECVKMHDVVRDTIASVAAKYHHHLDCYSSAISLIFEKKTELLHVSNCQKLKLLQVSSKGKESVPENFFQGMNKLMVLSLQNVLIQSMPSTLSALDNIHTLRLEACNVGDISIIGQKLMKLEILSFAKSSIKVLPLEIGQLTLLRLLDLTECNHLIQISATVLASLSRLEELYLRVRNFPSKESNHILFELQCLSHQLKVLEFAFIMVDEFLPKDLIFKNIVRFWVYVGDSSTISHGLVPRGYLHPNVLTLNNTYYSYIKKSVTIQHFLQRVEILSLDDIKNLKCVISDLDEEGFPLLKNLIIESCNNLEYAADSCDDHCVFPQVQSISLRNLENLKAIICHVAHHLCQKVEVSACQCFGSLQVLKIEYCKSLKTIFTLLFPRRTTSLAKLQCLHVVESHGIECIVSINTIKVDDSIIVFSNLVELKLQELPNLTAFIKTSIMHQHHSPYKVQESNTLLENFIEHDQEFLGEDMFIGSALFESNSLQLFPKLEKILLRACSSLNIVFDMKPSQLEDQHVDNAAFFAQLKELELSWLNNLNHIWGSVPSNIQGFHKLKSIKVANCDSLKYIFTPSIVRALTQLEKLVIQSCMSLEKFVGNEQGQNVETLVFVQLESLTLKDLPQLVNFGPNSYMILWPAMKSLCIDGCPLLKASNVCVQEENFNVISNSITSHDVGTTTSMEDSPSLRFLQCCFGGTKELLVSNSKAKALKMEEGVVDAKEINFFNEMGGSPMPILEHVIIKGWDSLDVLFHLKQSEDSNNTIVVNCLVKLMTMQLPSSPLGVIAFNNITLLSLEGCHRLRYICSYSIAKLLVKLQEIKVSNCKVVEQLFQSEEHEICVDYLEWPSLKRISVINCSMLEVVISKVEEGKINSFIITSFAQLQSLTLTHLPNVISFCNNTFLENGHGNEYFKQDHERASSSEEERNTRLDAPLINGFQFPNLRHIAIMGCNKMSCLFSPSTSKSLVHLQVLEICGCGDIEEIVSFEDTNKVMSVISNKFVFHNLQHLKLENLPKLKAFCKGSYDFDFPLLHEVFLKNCHMMEIFSCGSSYTPKLDKVTMEIGNVAKNIWMGDLNATMPLCKGMLTFQSSETLRWIKQHSWALRYLTKEKELTIEGFQRLLNLVPSNVMHLFQNLNQLTIKDCDSLVEVFESQGIIMMNKKEVTNYELQSMSLQHLPKLTHIWRFHGGVLGFKKLRVLKVEHCGSLCSLFSPSMAKSLVQLWHLRLELRHLTNFKCFSSQRNLDIELPSCEEMVIEKCPNMTSFCYGDVKTPKLLQIYKGSYEYVDLMVDLNATIHCANKNFKVPQQTLERSRFIEQDHHLLDYLRSQTELFVEDSETLLHCVPFNMFHRFQHIKQLKLHLYALPKLMHIWRENHGRILTFGNLRKLKIGFCGGLKSLLSPSIARGLSQLQEFSVHECEELEKIISDEESIHNVKIIEFPSLQWLTLYQLPSLGCFCSSSYHFELPSCHDIIIKECPKIEACCKGITKTFQN* 1947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3527 1946 PANTHER RPP4C3 1393 1531 - -
Amo20g3527 1946 PANTHER - 1002 1200 - -
Amo20g3527 1946 PANTHER - 1233 1353 - -
Amo20g3527 1946 Gene3D Ribonuclease Inhibitor 466 920 IPR032675 -
Amo20g3527 1946 Coils Coil 106 126 - -
Amo20g3527 1946 PANTHER RPP4C3 807 897 - -
Amo20g3527 1946 PANTHER RPP4C3 1833 1940 - -
Amo20g3527 1946 PRINTS Disease resistance protein signature 596 612 - -
Amo20g3527 1946 PRINTS Disease resistance protein signature 336 350 - -
Amo20g3527 1946 PRINTS Disease resistance protein signature 247 261 - -
Amo20g3527 1946 PRINTS Disease resistance protein signature 174 189 - -
Amo20g3527 1946 PANTHER RPP4C3 1566 1731 - -
Amo20g3527 1946 SUPERFAMILY L domain-like 460 889 - -
Amo20g3527 1946 Pfam NB-ARC domain 157 389 IPR002182 GO:0043531
Amo20g3527 1946 PANTHER - 807 897 - -
Amo20g3527 1946 PANTHER - 1833 1940 - -
Amo20g3527 1946 SUPERFAMILY RNI-like 982 1346 - -
Amo20g3527 1946 Gene3D - 302 389 IPR042197 -
Amo20g3527 1946 PANTHER - 1566 1731 - -
Amo20g3527 1946 PANTHER - 1393 1531 - -
Amo20g3527 1946 Gene3D - 147 301 IPR027417 -
Amo20g3527 1946 SUPERFAMILY RNI-like 1798 1933 - -
Amo20g3527 1946 SUPERFAMILY RNI-like 1388 1722 - -
Amo20g3527 1946 Gene3D Ribonuclease Inhibitor 1556 1733 IPR032675 -
Amo20g3527 1946 Gene3D Ribonuclease Inhibitor 935 1126 IPR032675 -
Amo20g3527 1946 Gene3D Ribonuclease Inhibitor 1769 1945 IPR032675 -
Amo20g3527 1946 Gene3D Ribonuclease Inhibitor 1380 1519 IPR032675 -
Amo20g3527 1946 Coils Coil 30 57 - -
Amo20g3527 1946 Coils Coil 348 368 - -
Amo20g3527 1946 PANTHER - 27 776 - -
Amo20g3527 1946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 402 IPR027417 -
Amo20g3527 1946 PANTHER RPP4C3 27 776 - -
Amo20g3527 1946 PANTHER RPP4C3 1002 1200 - -
Amo20g3527 1946 PANTHER RPP4C3 1233 1353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3527 Amo-Chr20 145553766 145565660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3527 171 469 WRKY Transcription Factor Family AT5G45050 25.000 7.34e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3527 - - adu:110276728 3808.45