Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3525 ATGGGTTGGGGTCACATTGGAAGAAATGGCAGTGACGAAGCTGGTCCTAGCAGCACCGTCCCCACAACCACCGAGCCACGGCGGTTCCCGCTGGCTGCTCAGCCGGAGATGATGCGTGCTGCTGAGAAGGACGAGCAGTATGCCTCTTTCGTCTATGAAGCCTGCCGCGACGCCTTCCGGCACCTCTTTGGTACAAGGGTTGCTGTTGCTTATCAAAACGAGACAAAACTCTTGGGACAAATGTTGTACTATGTTCTCACAACAGGATCAGGGCAGCAGACACTTGGGGAGGAGTACTGCGACATCACTCAGGTTGCTGGTCCTTATGGGCTGCCTCCTACCCCTGCAAGGCGTACTCTTTTCATTGTATACCAGACAGCGATTCCTTATATTGCAGATCGTATTAGTTCACGAATTGCTTCCCGTGGCATTGCCCTCGCTGATTCAGAGTTTGCGGAGAGTTATGGTGATAGTGCTATCAGGAGCAGTAATTCACAGGATTCTGTGGCTAGTCCTTCAACATCAGGACAACATAGTACAACTCTTTCAAGATTGAAGCAAAAACTGAGTGGTTTTTGGTTGCATGTGGTTCAGCAATGGCCTGCGATGCTCCCTTTTGTGCGTGAATTGATACAGCTGGTTCTTCGTGCTAATCTAATGCTGTTCTACTTTGAAGGTGATCCTTTGCTCAATAGGCTAATTGAGGTGATAAAGTTTCTAAAAGGAACTTCTCTACATTTATTCCATTTTCCCCTATTTTTTGCAGGCCTTTATTATCATATATCCAAGCGTGCTGCAGGCATTCGTTATGTCTTCATTGGAAAACCATCAAATCAAAGACCCAGATACCAAATACTAGGAGTATTTCTGCTGATTCAACTTTGTGTAATAGCTGCGGAGCGGCTACGTCGAAGAAATTTATCTTCAATTGCTGGCTCAGTTCATCAGGCATCCTTTGCAACCCAACAGAGATCAGCAGGACATGGTTTGCCTGTTCTGAATGAAGAAGGTAATCTGGCATCTCTAGATACTGACGAAGGAGGTTGGGTCTTTGATTCTTCATCTTCTGAGTATGGAACTAGCAAATGCACTCTTTGCCTAAGTAATCGTCAACATCCAACAGCTACATCCTGTGGCCATGTATTTTGCTGGAACTGTATCACAGAATGGTGCAATGAAAAGCCAGAATGTCCTCTTTGCCGCACCCCAATAACACATTCAAGTCTAGTTTGTGTGTATCATTCAGACTTCTAG 1254 0.4585 MGWGHIGRNGSDEAGPSSTVPTTTEPRRFPLAAQPEMMRAAEKDEQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRTLFIVYQTAIPYIADRISSRIASRGIALADSEFAESYGDSAIRSSNSQDSVASPSTSGQHSTTLSRLKQKLSGFWLHVVQQWPAMLPFVRELIQLVLRANLMLFYFEGDPLLNRLIEVIKFLKGTSLHLFHFPLFFAGLYYHISKRAAGIRYVFIGKPSNQRPRYQILGVFLLIQLCVIAAERLRRRNLSSIAGSVHQASFATQQRSAGHGLPVLNEEGNLASLDTDEGGWVFDSSSSEYGTSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3525 417 Pfam Zinc finger, C3HC4 type (RING finger) 361 406 - -
Amo20g3525 417 SMART ring_2 363 400 IPR001841 -
Amo20g3525 417 MobiDBLite consensus disorder prediction 1 30 - -
Amo20g3525 417 ProSitePatterns Zinc finger RING-type signature. 378 387 IPR017907 -
Amo20g3525 417 PANTHER PEROXISOME BIOGENESIS FACTOR 10 25 414 - -
Amo20g3525 417 SUPERFAMILY RING/U-box 356 406 - -
Amo20g3525 417 CDD RING-HC_PEX10 362 401 - -
Amo20g3525 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 414 IPR013083 -
Amo20g3525 417 Pfam Pex2 / Pex12 amino terminal region 244 304 IPR006845 -
Amo20g3525 417 Pfam Pex2 / Pex12 amino terminal region 44 226 IPR006845 -
Amo20g3525 417 ProSiteProfiles Zinc finger RING-type profile. 363 401 IPR001841 -
Amo20g3525 417 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 25 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3525 Amo-Chr20 145505698 145511425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3525 359 413 C3H Transcription Factor Family AT4G28270 32.394 8.97e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3525 K13346 - gmx:100783914 656.366