Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3524 ATGGCGGTTGGTGTCGTGAAGTGTAATTACATCAGAAAACGCAAAAGAGCATCATTGAAGCAAAAACTTCTTCTTAATGAGAGAGTTGAGGTAAGGAGTGTGGAAGATGGGTTTATGGGGTCATGGCACCCAGGTACAGTTATACATTGTGGCAAACAAAAGCGTCATGTGAGGTATGACAATGTATTGGAAGATGATGGATCAAGCCATGTTGTTGATGTGGTTGCTGTTTCACCTGTTGTGGATGGTGTTAGTGTTTCAGATTCTAATGTTGAGCGTGGCTACATTAGGCCAATGCCTCCGATGTTTGAATTTGGTGGATGGGACCTCCCATTTGGACTTTGTGTCGACGTAAGTTACCAAGAAGCATGGTGGGAAGGTGTTATTTTTGATCACTGCAATGGAATGGATGAGAGGAGGGTGTTCTTCCCTGATTTGGGTGATGAGATGAAAATTGGGATCCATCATTTGAGGATGACTCATGATTGGGATGAATTTGCCGACGATTGGAAGCCAAGGGGGAACTGGGTTTTTCTTGAATTGGTAGAGGAGTGTGAGAGGTTGTCCTATGTTGCTGTCTCAGTGAAGCAGATTTGGTATGATGTGAGGGTTAGGAAGGAGTTTGAGAGCCTTATTAGGGATTGGACTTGTGATGAGAAGGAATTGTGGAGAGATCTTGTTATGGAGGTAGCTGGTGACTACTATGCTCTCACATTGCAAGACATTTTGCCAGCATTAAAAATTGATTTCTTGGAAGAAACTCCAAGAACCGAGTTAGTTGAGCCTACTGCTATTGCTGATAGTGATGATGTTCCCACTAATGCATTTGGTTCTTGCACAGGAATAACTGATGTCTCTGAGAAGAAAGGTGACTCCGCGAATCTAATGGATTGTGATCAAAACACTGGTAGCATCGATCATATTCAAGAGGAAAACAATATAGATACTTTGAATACTGGGGCCTTTGACGAGCAAAATATGTCAGAGTTAAATGTGAATGTACCTGAGGAGGAAGATGTGAGGTCAAGAGAACCGATATCTCCAATTCAGCAAATATTTCCTGAAGATCAAAAGGAAACTTCCAGCCATAGACATGTTCGTTCATCTGTGCTTTGGAAACCTTTGGTGTTGTCAGAAGTTGAATTCTGTCCTGAGGTTATTAAGCAATACACACTTGGATGTGAGAGCAAGAGGGTTAGGGAACTCTTGAAGACAAAAGTGAGAAAACATCTTGCTTATATTGGATGGACAATTGAGGTGACTGAAGACAGGTATTTTGCTGGGCGATACAGATACAGATACAAGCCACCTGGTGAACAAGGCACAAAATTTTACACTTCAATTGCCAAAGCTTGTAGATATATTAAGCAAAATGAACCTCTGGTGTCCCAAAATGACCCGGGTAGGATGACTGATATGGTTGATAGTAGCATTCTACATCTTCTTTCTGATCAATCGCGTAGCAATCGGGTTGATGATGCTTATAATTCTATGGTGGCGTCTTCCTCTTCTGCGAAAGTTGTAGTTGAACCTGAATTTTGTCCGGAAGCTGTTGTGAAATATTACTTGCATGCATTAGAGAATCGCCATGCTGATAAAAGGAAATGGAACTTGAAAGCAAAACAACATCTGTTAGCAGAAGGATGGGTTTTTGACTATCCAACTGAGAAACGGAGGAGAACATTGTACAAGTCTCCGAAAAATCAGACTTTGGGAACACTTCAAGGTGCTTGTAGGCTATACATTAAAGAAAGTATTCCCAAATGGACAATTTCCAGCATGAGACCTATGCATCTCTCTGTTGGTAACGAAGAAAGTGTTCATACTGATGATCTATTACGTTGTGTCTCACAATTGGTTCAAAGGGAACCTGAATTACACAATGGTTTGCCAGTGAGTACTTCAAAAGGGAATGGGAATGAAAACAATCCTCGCTCGAAGAATTCAAAGAATAGCTCCCGAAAGCGCCATAGGAATGGAGTACCTACACGGGTGCTAAGATCAAGCAAAAGGGTGCAGAAAGTGCTTGCCCCTGGATTCTTACACCAAAAACCTCAAAATATTTTGTCTTGGTTAATAGATAACAACATCTTTTCGGCAAAGTGTAAGGTCTATTTCAGGGAAAAACGTGGCAAGAATTCAATCAAGGCTGAGGGGCGCATAGGTCGTGATGGAATCAAGTGTTGCTGTTGTCAAGAGATGTACAGTCTTTGTGGCTTTGCTAATCATGCTGGTTCCAATAGTAACCACAGACCTTCTGCTAGTATCTTCTTGAAAGACGGTCGCTCGCTACTGGATTGCCAGATTCAAGTAATGCATGAAAAAACGAAGGAGGAGAAAACGGAGAAACAATCAAATGATCTTTGTCGAGGGGAAAACGACAACATTTGTTCTGTGTGTCAATATGGGGGTGAACTTATCTTGTGTGATCAATGTCCTTCTGCATTTCATATGAGTTGTCTAGGTTTGAAGGTAATTCCTGGTGGTGACTGGTTTTGTCCATCATGTCGATGTGGAATTTGCAGCCAAATGAAGGGGGATGAGGGCAAACAATTTCTTAATTGCATTCAATGTGAACGTAAATATCATCTTGAGTGCTTGAGAAATGGAACAGTAGATAAATTAAGACGTATGGCAAAATGGTTCTGTGGAAACAAATGTGAACAGATATACACCAGCCTGCATAAACAATTAGGAAAACCAATTGCAGTGGATGCAGACAATCTAACTTGGACATTGATCAAGTCTGTTGACTCTGAGAATTGTGATGTTGGTTCTGCTAAAGACAAATACTTGGCAGAGAATTACAGCAAACTCAATATTGCACTTTCTGTGATGCATGAATGCTTTGAGCCCCTACAGAACCCTTCCTCTAGCAGAGATCTCATGGAAGATGTCATATTCAGCAGATGGTCTGAGCTTAATAGAACGAATTTCCAGGGTTTCTACACTGTACTTCTTGAAAGAAATGAAGAACTGATAAGCGTGGCAACTTTTAGGGTGTATGGAGAGAAGGTCGCAGAAGTACCACTTGTAGGTACGAGATTTCAGTACCGTCGACTTGGAATGTGTCGCATTTTAATGAATGAACTTGAAAAGATGCTCACACAGCTAGGGGTGGAGAGGCTAGTTTTGCCTGCTGTTCCTGGTGTGCTCGAGACATGGACGAAATCTTTTGGCTTTGACCAGATGACAGAATTCCAAAGATCAGAGTTTCTGGACTACACTTTCCTAGATTTTCAAGGAGCCATCATGTGCCAAAAGCTATTGGGAAAGGAGAGTCAATCTCCGGATTCAGTTATAACAAGAGAGATCCAGCCAGCATCAGTCTCTGTTAAATGTAAAATTGATTTTGAAAAGTTCAGTTCTGGATCTGATGAAGTATACCAAGGAGAGGAAACTGATGAAAGTAGAATGACAGATGTACAAATGGTGGAGTACGTCTCGCTGTTGTCGACGATTAAACAAGAAAACAAATCTTAA 3483 0.4131 MAVGVVKCNYIRKRKRASLKQKLLLNERVEVRSVEDGFMGSWHPGTVIHCGKQKRHVRYDNVLEDDGSSHVVDVVAVSPVVDGVSVSDSNVERGYIRPMPPMFEFGGWDLPFGLCVDVSYQEAWWEGVIFDHCNGMDERRVFFPDLGDEMKIGIHHLRMTHDWDEFADDWKPRGNWVFLELVEECERLSYVAVSVKQIWYDVRVRKEFESLIRDWTCDEKELWRDLVMEVAGDYYALTLQDILPALKIDFLEETPRTELVEPTAIADSDDVPTNAFGSCTGITDVSEKKGDSANLMDCDQNTGSIDHIQEENNIDTLNTGAFDEQNMSELNVNVPEEEDVRSREPISPIQQIFPEDQKETSSHRHVRSSVLWKPLVLSEVEFCPEVIKQYTLGCESKRVRELLKTKVRKHLAYIGWTIEVTEDRYFAGRYRYRYKPPGEQGTKFYTSIAKACRYIKQNEPLVSQNDPGRMTDMVDSSILHLLSDQSRSNRVDDAYNSMVASSSSAKVVVEPEFCPEAVVKYYLHALENRHADKRKWNLKAKQHLLAEGWVFDYPTEKRRRTLYKSPKNQTLGTLQGACRLYIKESIPKWTISSMRPMHLSVGNEESVHTDDLLRCVSQLVQREPELHNGLPVSTSKGNGNENNPRSKNSKNSSRKRHRNGVPTRVLRSSKRVQKVLAPGFLHQKPQNILSWLIDNNIFSAKCKVYFREKRGKNSIKAEGRIGRDGIKCCCCQEMYSLCGFANHAGSNSNHRPSASIFLKDGRSLLDCQIQVMHEKTKEEKTEKQSNDLCRGENDNICSVCQYGGELILCDQCPSAFHMSCLGLKVIPGGDWFCPSCRCGICSQMKGDEGKQFLNCIQCERKYHLECLRNGTVDKLRRMAKWFCGNKCEQIYTSLHKQLGKPIAVDADNLTWTLIKSVDSENCDVGSAKDKYLAENYSKLNIALSVMHECFEPLQNPSSSRDLMEDVIFSRWSELNRTNFQGFYTVLLERNEELISVATFRVYGEKVAEVPLVGTRFQYRRLGMCRILMNELEKMLTQLGVERLVLPAVPGVLETWTKSFGFDQMTEFQRSEFLDYTFLDFQGAIMCQKLLGKESQSPDSVITREIQPASVSVKCKIDFEKFSSGSDEVYQGEETDESRMTDVQMVEYVSLLSTIKQENKS* 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3524 1160 MobiDBLite consensus disorder prediction 631 647 - -
Amo20g3524 1160 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 929 1079 IPR000182 GO:0016407
Amo20g3524 1160 MobiDBLite consensus disorder prediction 649 664 - -
Amo20g3524 1160 Gene3D - 928 1093 - -
Amo20g3524 1160 SUPERFAMILY FYVE/PHD zinc finger 781 837 IPR011011 -
Amo20g3524 1160 Pfam Agenet domain 27 101 IPR008395 -
Amo20g3524 1160 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 1146 - -
Amo20g3524 1160 Pfam PHD-finger 796 838 IPR019787 -
Amo20g3524 1160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 788 838 IPR013083 -
Amo20g3524 1160 PANTHER PHD ZINC FINGER PROTEIN 10 1146 - -
Amo20g3524 1160 MobiDBLite consensus disorder prediction 626 665 - -
Amo20g3524 1160 Pfam Acetyltransferase (GNAT) family 963 1061 IPR000182 GO:0016407
Amo20g3524 1160 CDD NAT_SF 985 1045 - -
Amo20g3524 1160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 839 892 IPR013083 -
Amo20g3524 1160 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 944 1071 IPR016181 -
Amo20g3524 1160 ProSiteProfiles Zinc finger PHD-type profile. 794 839 IPR019787 -
Amo20g3524 1160 SMART PHD_3 838 888 IPR001965 -
Amo20g3524 1160 SMART PHD_3 796 837 IPR001965 -
Amo20g3524 1160 Pfam Tify domain binding domain 719 770 IPR032308 -
Amo20g3524 1160 CDD PHD1_AIRE 797 836 - -
Amo20g3524 1160 SUPERFAMILY FYVE/PHD zinc finger 838 885 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3524 Amo-Chr20 145498271 145504643 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3524 23 1038 PHD Transcription Factor Family AT5G58610 35.912 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo20g3524 Acetyltransf_1 0.00031 CL0257