Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3521 ATGTCTTTTTCCTCTTGGGCCTCACCTGACACAAGATTGTTCATCAATGGGATTCTCATTCTCCCTTCAACTCTTCAATTCTTCTTCTTTCTCATTTTGAAACAACTCACTTTACTTTTGAGATCAATGGGGTTCTCAAGAACTGCAGAATCTGCACTTCTTCTTGTGGCATTCTTCTGTCTTCTGAGATCTGCACATGCTTTACTTTCTCCCAAAGGAATCAACTTTGAAGTGCAAGCTTTAATGGCCATAAAAGCTTCTCTAGTGGACCCTCATGGCATTTTGGACAATTGGGATGGAGATGCAGTTGATCCATGTAGCTGGAACATGGTCACATGTTCTCCTCAGAGCTTTGTCATTAGCTTAGGAATTCCAAGTCAGAATTTATCTGGTACTCTATCACCAAGCATTGGAAACCTAACAAACCTTCAGAGTGTTGTGCTGCAAAATAATAACATAACTGGACCAATCCCTTCAGAGCTAGGCAAACTTTCCATGCTTCAAACACTTGATCTCTCTAATAACTTCTTTAATGGGGAAATTCCTCAATCTCTTGGTCATCTCAGAACACTTCAGTACTTGAGGCTTAATAATAACAGTTTTTCTGGGGAATGTCCTGTGTCAGTGGCTAACATGGCTCAGCTTTCTTTTCTTGACTTGTCCTACAATAATCTAAGTGGATCTGTACCAAGAATTTTGGCCAAATCATTCAGCATTGTTGGAAACCCCCTTGTATGCACAACAGGAAAAGAAACAAACTGCCATGGAATGACACTGATGCCTATGTCCATGGACTTAAACACTACTCAGAGCGCTTCACCATCAGGCACACATAAAACTCACAAAATCGCCATCGCTTTCGGCTTAAGTCTTGGATGCCTCTCCTTTATAGCTCTTGTCTTTGGACTTGTTATATGGTGGAGGCGCAAGCACAACAAGCAGGCATTCTTTGATGTCAAAGACCGGCACCATGAAGAAGTGTACCTTGGAAACCTGAAGAGGTTCCAATTAAGAGAACTTCAGATTGCTACAAACAACTTCAGCAACAAGAACATACTGGGAAAGGGTGGTTTTGGAAATGTGTACAAAGGAAGACTTCAAGATGGGAGTGTTGTAGCTGTGAAGAGGCTGAAAGATGGGAATGCAATTGGAGGGGAGATTCAGTTTCAGACAGAAGTTGAAATGATCAGCTTGGCAGTGCACAGAAACCTCCTTAAACTTTATGGATTTTGTGTTACACCAACAGAAAGGCTTTTGGTTTATCCCTACATGTGCAATGGGAGTGTTGCTTCACGTCTGAAAGGAAAGCCAACATTGGAGTGGGGAACAAGGAAGCAAATAGCATTAGGAGCAGGAAGAGGACTGCTGTACCTTCATGAGCAGTGTGATCCAAAAATAATCCACAGGGATGTGAAAGCTGCAAACATATTACTTGATGAGTATTGTGAAGCAGTTGTTGGTGATTTTGGGTTGGCAAAGCTTTTGGATCACAAAGACACACATGTCACAACTGCTGTCAGGGGTACTGTGGGCCACATTGCACCTGAATATCTCTCCACAGGCCAGTCCTCTGACAAAACTGATGTCTTTGGATTTGGCATTCTCCTTCTTGAATTGATCACTGGCTTGAGGGCTTTGGAGTTTGGCAAGGCTGCTAACCAAAAAGGTGCTATGCTTGATTGGGTAAGCAAAATTCACAAGGAGAAGAAGCTTGAATTACTTGTAGACAAGGATCTAAAGAACAACTATGACAGGATTGAGCTTGAGGAAATTGTAAAGGTAGCTCTATTGTGCACACAATATCTTCCGGCCCACAGGCCCAAGATGTCTGAGGTTGTGCGCATGCTTGAAGGTGATGGGCTTGCAGAGAAATGGGAAGCCTCACTAAGTGCCCATGACACAACAAAGCCCAACAAAGCCCATGAGTTCTCTTATTCAGATCGTTACTCTGATCTCACTGATGACTCTTCTTTGTTGGCCCAAGCTATGGAGCTTTCTGGCCCAAGATGA 2010 0.4289 MSFSSWASPDTRLFINGILILPSTLQFFFFLILKQLTLLLRSMGFSRTAESALLLVAFFCLLRSAHALLSPKGINFEVQALMAIKASLVDPHGILDNWDGDAVDPCSWNMVTCSPQSFVISLGIPSQNLSGTLSPSIGNLTNLQSVVLQNNNITGPIPSELGKLSMLQTLDLSNNFFNGEIPQSLGHLRTLQYLRLNNNSFSGECPVSVANMAQLSFLDLSYNNLSGSVPRILAKSFSIVGNPLVCTTGKETNCHGMTLMPMSMDLNTTQSASPSGTHKTHKIAIAFGLSLGCLSFIALVFGLVIWWRRKHNKQAFFDVKDRHHEEVYLGNLKRFQLRELQIATNNFSNKNILGKGGFGNVYKGRLQDGSVVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLKLYGFCVTPTERLLVYPYMCNGSVASRLKGKPTLEWGTRKQIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDEYCEAVVGDFGLAKLLDHKDTHVTTAVRGTVGHIAPEYLSTGQSSDKTDVFGFGILLLELITGLRALEFGKAANQKGAMLDWVSKIHKEKKLELLVDKDLKNNYDRIELEEIVKVALLCTQYLPAHRPKMSEVVRMLEGDGLAEKWEASLSAHDTTKPNKAHEFSYSDRYSDLTDDSSLLAQAMELSGPR* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3521 669 Gene3D Phosphorylase Kinase; domain 1 316 423 - -
Amo20g3521 669 SUPERFAMILY Protein kinase-like (PK-like) 324 617 IPR011009 -
Amo20g3521 669 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Amo20g3521 669 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 48 669 - -
Amo20g3521 669 ProSiteProfiles Protein kinase domain profile. 347 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3521 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Amo20g3521 669 SMART serkin_6 347 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3521 669 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 48 669 - -
Amo20g3521 669 Pfam Leucine rich repeat N-terminal domain 77 114 IPR013210 -
Amo20g3521 669 SUPERFAMILY L domain-like 77 349 - -
Amo20g3521 669 Pfam Protein kinase domain 348 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3521 669 Gene3D Ribonuclease Inhibitor 74 256 IPR032675 -
Amo20g3521 669 Gene3D Transferase(Phosphotransferase) domain 1 424 635 - -
Amo20g3521 669 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3521 Amo-Chr20 145463505 145467795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3521 49 669 Receptor kinase-like Gene Family AT5G16000 74.641 0.0 966
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Amo20g3521 Pkinase 1.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3521 - - gmx:100806650 1051.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3521 20 145463505 145467795 Amo10g2924 10 94573359 94577649 hybridization
Amo20g3521 20 145463505 145467795 Amo14g3891 14 144404614 144408627 PCT
Amo14g3891 14 144404614 144408627 Amo20g3521 20 145463505 145467795 PCT