Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3520 ATGCTGAGGGAAGGAACAAACATCAATATTGGCGGGAGTTGCAGCTCCACCAACAACTGGTCACGTGCCTGCGACACGTGCCGCTCTGCACCCTCCGTGGTGTACTGCCGCGCGGACTCTGCCTATCTCTGCTCCGCATGTGACGACAGAGTCCACGCGGCAAATAGGGTGGCGTCGAGGCACGAGCGCGTGTGGGTCTGCGAGGCTTGCGAGCGTGCCCCGGCAGCCTTCCTCTGCAGAGCCGACGCCGCCTCCCTCTGCTCCTCCTGCGACTCCGACATCCACTCCGCCAACCCCCTTGCCGGCCGCCACCACCGCGTCCCCATTCTCCCCATCTCAGGCTGCTCCTCGCTCATCCGAGAAGAAGAACAAAAAGAAGGAGAACCAGAAAGAGAAAATGATCACGTGTTTGAAATTGAAGGTACAATTAATAATCAGAATTATAACCATGGATGTGAAATGGAGGATGAGGAGTGTGAGGGTGATGATGAGGCTGAAGCTGCTTCGTGGTTGTTGCCTCATCCTGTGAGGATGGGTGGTAACGATGAGAGTGATGGGTTCTTGTTTTGTGGTGGCGACGGTGACGGCGATGGTGATGAGTACTTGGAGTTTGTGGATTGTGATGATGATAATAATAATAATAACCGGTTTAGTTGTCTTGATCATGATCAAGATCAAGATATGCTGCATAACTATGGCGGCGATCATAATCAGGGAAACAACCATGACAGCGTGGTTCCGGTTCAGATGCAACAGTGTTTCGAGTTTGACTCCTCTAAAGTTGGTGCTGGATTCAGTTACAATGGTTCTCTTAGTCAAAGTGTTTCATTGTCATCCATGGAAGTTGGAGTTGTACCAGAATCAACATTGAGTGATGTGTCAATCTCACATTCAAAGGCACAAATAGGAACAAGTGAGCAATTTCCTCCAATGCCTATGCCTTCACCACTTCTAACTCCAATGGACAGAGTAGCCAGAGTTCTAAGATACAAAGAGAAAAAGAAAACAAGAAAGTTTGAGAAGAAAATAAGATATGAATCAAGAAAGGCCTATGCAGAAACCAGGCCACGTATTAAGGGTCGTTTTGCAAAGAGAACAGATGTAGAAGCTGAAGTTGATCAAATGTTATCATCAACCCTAATGTCAGAAGCTGGATATGGCATTGTTCCTTCCTTCTGA 1179 0.4826 MLREGTNINIGGSCSSTNNWSRACDTCRSAPSVVYCRADSAYLCSACDDRVHAANRVASRHERVWVCEACERAPAAFLCRADAASLCSSCDSDIHSANPLAGRHHRVPILPISGCSSLIREEEQKEGEPERENDHVFEIEGTINNQNYNHGCEMEDEECEGDDEAEAASWLLPHPVRMGGNDESDGFLFCGGDGDGDGDEYLEFVDCDDDNNNNNRFSCLDHDQDQDMLHNYGGDHNQGNNHDSVVPVQMQQCFEFDSSKVGAGFSYNGSLSQSVSLSSMEVGVVPESTLSDVSISHSKAQIGTSEQFPPMPMPSPLLTPMDRVARVLRYKEKKKTRKFEKKIRYESRKAYAETRPRIKGRFAKRTDVEAEVDQMLSSTLMSEAGYGIVPSF* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3520 392 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 18 392 IPR045281 GO:0009909
Amo20g3520 392 Pfam CCT motif 323 365 IPR010402 GO:0005515
Amo20g3520 392 CDD Bbox1_BBX-like 23 66 - -
Amo20g3520 392 Pfam B-box zinc finger 64 109 IPR000315 GO:0008270
Amo20g3520 392 Pfam B-box zinc finger 22 64 IPR000315 GO:0008270
Amo20g3520 392 ProSiteProfiles CCT domain profile. 323 365 IPR010402 GO:0005515
Amo20g3520 392 SMART bboxneu5 67 109 IPR000315 GO:0008270
Amo20g3520 392 SMART bboxneu5 19 66 IPR000315 GO:0008270
Amo20g3520 392 ProSiteProfiles Zinc finger B-box type profile. 62 109 IPR000315 GO:0008270
Amo20g3520 392 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 18 392 - -
Amo20g3520 392 ProSiteProfiles Zinc finger B-box type profile. 19 66 IPR000315 GO:0008270
Amo20g3520 392 CDD Bbox1_BBX-like 66 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3520 Amo-Chr20 145442610 145445070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3520 1 392 C2C2-CO-like Transcription Factor Family AT3G02380 47.826 3.77e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Amo20g3520 zf-B_box 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3520 - - ahf:112717988 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3520 20 145442610 145445070 Amo10g2925 10 94587987 94590932 hybridization
Amo20g3520 20 145442610 145445070 Amo14g3890 14 144392883 144395571 PCT
Amo14g3890 14 144392883 144395571 Amo20g3520 20 145442610 145445070 PCT