Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3515 ATGGGAAACAATTGTGTTGGATCCAGAGATTCCAAGGAAGGACTATTCTCCTTCTCCTATGTTGCTTCCACTCCATTCTGGTGGTCTAATCCAACAACCACAATCCTAGAACCTCCTTCATGCACACAACCTGTTCAACAAAATGCTCCACAGCCCATCAAGATTGATGCTCATCATCAACACTATTACAAACAAGAGGAGGATAAGCAGCAATCTAGGCAAGTAGTAGTTAGACCAGAAGAGACACCAAAAGCAAAACTTCAAAGTACTAAGAGGTCTGCAAGTGCAGGGCTTCGAGCAGACTCGGTTCTGCCGAGACAAACCGGCCACATTAAAGAGTACTTTCATTTGGGAGCTGAGCTTGGGCATGGACAATATGGAACAACTTTTCTTTGTGTAGAGAAGGCTACTGGAATCAAGTATGCATGCAAGTCCATTGCAAAAGTGAAGTTGCTTACAGATGATGATGTGGATGATGTGAGGAGGGAGATTCAGATAATGCATCACTTGGCGGGAAGCCCCAATGTGGTCTCCATCAAAGGGGCTTACGAGGATGCCATTGCGGTTCATGTTGTCATGGAGTTGTGTGCAGGGGGTGAGCTCTTTGATAGGATTGTGGAAAGGGGCCATTACACGGAAAAGAAGGCGGCGAAGCTTGTCAGGACTATTCTCAGTGTTGTGGAGGCTTGCCACTCCCTTGGAGTTATGCATCGTGACCTTAAGCCAGAGAATTTCCTTTTTCTTGATGTCCATGAAGATTCCACCCTCAAGGCAATAGATTTTGGAATGTCTGCTTTTTTCAAACCAGGAGACAAATTCACCGATGTGGTAGGAAGTCCTTACTATATTGCACCCGAAGTTCTGTGCAAGCATTATGGCCCAGAAGCAGATGTTTGGAGTGCTGGTGTGATGCTATACATTCTCTTATGTGGATTCCCTCCATTTTGGGGCGAATCAGAGCAAGAGATATTTCACGAGGTTTTGAATGGTGATCTTGATTTCTCTTCTGATCCTTGGCCGAGTATCTCTGAAAGTGCAAAAGACTTGGTGAGGAGCATGCTTGTTAGAGATCCAAGAAAACGGATTACAGCTCATGAAGTTCTTTGTCACCCTTGGATTCAAGAAAATGGAGTTGCTCCAGACAAGCCTTTAGATTCTACGGTTTTGAGTCGCCTGAAGCAGTTTTCTGCAATGAACAAGCTCAAGAAAATGGCTCTCAGAATTATTGCAGAGAATCTCTCTGAAGAAGAAATTTCAGGATTGAAAGAAATATTCAAGATGATAGACACGGACAACAGTGGTCAAATAACTTTTGAAGAATTCAAGGTTGGACTGAGAACGTTTGGTGCTAATCTCAGCGAATCAGAAATTTACGATCTAATGCAAGCTGCAGATGTTGATAACAGTGGCACAATTGAGTATGGGGAATTCATAGCTGCAACAATGCATTTAAACAAAGTCAAAAGAGAAGATCATTTGGTCACAGCTTTCTCATACTTTGATAAAGATGGAAGTGGCTACATCACTCAAGATGAGCTTCAACAAGCTTGTGAAGAATTTGGCATGGAGGATGTCAGCTTGGATGAAATCATCCGAGAAGCTGATCAGAATAACGATGGCAGAATAGACTACAATGAATTTGTTGCAATGATGCAGAGAGGAGATACAGATTTAGGAAAGACTGGTGTAAAAGGTAGCACTAGTTTTAGAATTGGATTTAGGGAAGCACTTTCAGTATGTTGA 1743 0.4274 MGNNCVGSRDSKEGLFSFSYVASTPFWWSNPTTTILEPPSCTQPVQQNAPQPIKIDAHHQHYYKQEEDKQQSRQVVVRPEETPKAKLQSTKRSASAGLRADSVLPRQTGHIKEYFHLGAELGHGQYGTTFLCVEKATGIKYACKSIAKVKLLTDDDVDDVRREIQIMHHLAGSPNVVSIKGAYEDAIAVHVVMELCAGGELFDRIVERGHYTEKKAAKLVRTILSVVEACHSLGVMHRDLKPENFLFLDVHEDSTLKAIDFGMSAFFKPGDKFTDVVGSPYYIAPEVLCKHYGPEADVWSAGVMLYILLCGFPPFWGESEQEIFHEVLNGDLDFSSDPWPSISESAKDLVRSMLVRDPRKRITAHEVLCHPWIQENGVAPDKPLDSTVLSRLKQFSAMNKLKKMALRIIAENLSEEEISGLKEIFKMIDTDNSGQITFEEFKVGLRTFGANLSESEIYDLMQAADVDNSGTIEYGEFIAATMHLNKVKREDHLVTAFSYFDKDGSGYITQDELQQACEEFGMEDVSLDEIIREADQNNDGRIDYNEFVAMMQRGDTDLGKTGVKGSTSFRIGFREALSVC* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3515 580 Pfam EF-hand domain pair 491 552 IPR002048 GO:0005509
Amo20g3515 580 Pfam EF-hand domain pair 421 481 IPR002048 GO:0005509
Amo20g3515 580 CDD EFh 496 552 IPR002048 GO:0005509
Amo20g3515 580 ProSiteProfiles Protein kinase domain profile. 115 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3515 580 ProSitePatterns EF-hand calcium-binding domain. 429 441 IPR018247 -
Amo20g3515 580 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 72 562 - -
Amo20g3515 580 SUPERFAMILY EF-hand 412 553 IPR011992 -
Amo20g3515 580 Gene3D Transferase(Phosphotransferase) domain 1 201 383 - -
Amo20g3515 580 ProSiteProfiles EF-hand calcium-binding domain profile. 527 557 IPR002048 GO:0005509
Amo20g3515 580 CDD EFh 421 480 IPR002048 GO:0005509
Amo20g3515 580 Gene3D - 384 556 - -
Amo20g3515 580 Gene3D Phosphorylase Kinase; domain 1 117 200 - -
Amo20g3515 580 SMART efh_1 420 448 IPR002048 GO:0005509
Amo20g3515 580 SMART efh_1 526 554 IPR002048 GO:0005509
Amo20g3515 580 SMART efh_1 456 484 IPR002048 GO:0005509
Amo20g3515 580 SMART efh_1 492 520 IPR002048 GO:0005509
Amo20g3515 580 Pfam Protein kinase domain 116 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3515 580 ProSiteProfiles EF-hand calcium-binding domain profile. 452 487 IPR002048 GO:0005509
Amo20g3515 580 MobiDBLite consensus disorder prediction 63 97 - -
Amo20g3515 580 ProSitePatterns EF-hand calcium-binding domain. 465 477 IPR018247 -
Amo20g3515 580 ProSitePatterns Protein kinases ATP-binding region signature. 121 148 IPR017441 GO:0005524
Amo20g3515 580 ProSiteProfiles EF-hand calcium-binding domain profile. 416 451 IPR002048 GO:0005509
Amo20g3515 580 SMART serkin_6 115 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3515 580 PANTHER SERINE/THREONINE-PROTEIN KINASE 72 562 - -
Amo20g3515 580 ProSitePatterns EF-hand calcium-binding domain. 535 547 IPR018247 -
Amo20g3515 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Amo20g3515 580 CDD STKc_CAMK 115 372 - -
Amo20g3515 580 ProSiteProfiles EF-hand calcium-binding domain profile. 488 523 IPR002048 GO:0005509
Amo20g3515 580 ProSitePatterns EF-hand calcium-binding domain. 501 513 IPR018247 -
Amo20g3515 580 SUPERFAMILY Protein kinase-like (PK-like) 106 396 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3515 Amo-Chr20 145369129 145373017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3515 91 574 EF-hand Containing Proteins AT5G04870 75.826 0.0 789
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Amo20g3515 Pkinase 2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3515 K13412 - gmx:100783079 826.239