Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3512 ATGGAGAAGGTACCAGGGATGGAAGGCAACGCTGAGAGTCAAATGACTTCGGCTGCGGCCTTCGTCGAAGGAGGGATTCAAGAATCATGTGATGATGCTTGCAGCATATGCCTTGAGGATTTCTCCGAAAGTGATCCTTCGACAACCACTGCATGCAGGCATGAGTTTCACCTTCAATGTGTTCTTGAATGGTGCCAGAGAAGCTCTCAGTGCCCTATGTGTTGGCAAACTATTAGCATGAAGGATCCAACCAGTCAAGAGCTGTTTGAGGCAGTAGAACGGGAAAGGAAGTTGAGGGCTATCGCACCAAGGACTGCTGCTATCTTTCACCACCCTGCCTTTGGTGATTTTGGACTGCAGCATTTAGGCATAAGTGATGCTGATCTTGAACAACGAATAATTCAACATTTAGCTGCAGCAGCAGCAGTTGGGAGATCACACCATCATGCTTGGAGGGAAGGGCATCAAACTAGGGCATCTGCTCATGGTCATCCACCCGTTATCGTTTTGTCATCTCAGCCAAGTGCACCGCAAGTCCCTGAATCATCTCCTAGAGGGGGAGATGAACCAGCTACAAATCCTTTAGGAACTCCATCTAGTCCTATGACATCCCGTGGAGGTGAAATATCACGGCAGATCCCACATCTTCAGACTCAAAGCTCTTCTTCAGCTCCTCGGGATAGAGACTCTATTGCGCAATCTTCTCCAGCAAACCAAGATAGAGCAGGGCCATCAGAATCCCAGTCCATTTCTGATTCTCTGCGGGCCCGATTTAGTGCGTTGTCCATGAGATACAAAGAGTCAATTTCAAAAGGCGCAAGGGGATGGAAGGAGAGGCTGTTCTGTCATGGTTCTTCCATGTCAAAAGTTGGCTCAGAAGCTAGGAGAGAGGCTGGAATTGCCGGCGTCACACAATTGGTGCAATCCCAATCTCTTCAAAATAGAGCAACTTATAGAACTGCGACTACCTCTTTGTCAAATCATTTGGAGGATCATCCCACTGGAGAGGTGACCAACCAGAACAGGGGAGCTAGAAGAGAGAATGCATCGCATGATAACACTCCAGCTGCTTGTTCTGCTAGCTCACGTTCGAATTGA 1098 0.4827 MEKVPGMEGNAESQMTSAAAFVEGGIQESCDDACSICLEDFSESDPSTTTACRHEFHLQCVLEWCQRSSQCPMCWQTISMKDPTSQELFEAVERERKLRAIAPRTAAIFHHPAFGDFGLQHLGISDADLEQRIIQHLAAAAAVGRSHHHAWREGHQTRASAHGHPPVIVLSSQPSAPQVPESSPRGGDEPATNPLGTPSSPMTSRGGEISRQIPHLQTQSSSSAPRDRDSIAQSSPANQDRAGPSESQSISDSLRARFSALSMRYKESISKGARGWKERLFCHGSSMSKVGSEARREAGIAGVTQLVQSQSLQNRATYRTATTSLSNHLEDHPTGEVTNQNRGARRENASHDNTPAACSASSRSN* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3512 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 8 362 - -
Amo20g3512 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 84 IPR013083 -
Amo20g3512 365 MobiDBLite consensus disorder prediction 193 252 - -
Amo20g3512 365 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 8 362 - -
Amo20g3512 365 SMART ring_2 34 74 IPR001841 -
Amo20g3512 365 SUPERFAMILY RING/U-box 26 82 - -
Amo20g3512 365 Pfam Ring finger domain 33 74 IPR001841 -
Amo20g3512 365 MobiDBLite consensus disorder prediction 322 365 - -
Amo20g3512 365 MobiDBLite consensus disorder prediction 322 344 - -
Amo20g3512 365 MobiDBLite consensus disorder prediction 148 252 - -
Amo20g3512 365 ProSiteProfiles Zinc finger RING-type profile. 34 74 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3512 Amo-Chr20 145325447 145330423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3512 31 82 C3H Transcription Factor Family AT4G00335 48.077 1.63e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3512 K19043 - gmx:100800419 449.899