Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3505 ATGGTTCGTCAAGCTGATTTAGTAATTCTTGGTGTCTCTGTTGGTTTGGCCCTTGGAATTCTGATATCTTGTGCCATATTTTTTGGCATAAGGTGGTACAAGAAACGTGTGAATATTGGACCATCTGCAAATGAGAATAGTGTAACAACTCTTCCAATACGAACAAATGGGTTGGGAACAAGCACCGACATCAGTGCTTCTATAACTAGTTCCATAGCTCCATCAAGATATGATAATGTACAGAAAAATTCTCATTTCGGCTGGTGGAGTAATCAAAGCAAAGATCGTTTTGCTTCAGCATCAGGCATTTTAAAGTACTCGTATAGAGAAATTCAAAAGGCAACACAAAATTTCACAACTTCCTTGGGGCAAGGATCATTTGGCACAGTTTATAAAGCCACAATGGCTACAGGGGAGGTGGTAGCTGTGAAGGTTCTTGCGCCTAATTCCAAACAAGGGGAGAAAGAATTCCAAACGGAGGTGCTTCTGCTTGGAAGACTGCATCATCGAAATCTTGTGAATTTGATTGGATATTGTGTAGATAAAGGACAGCGCATACTTGTCTATCAGTTCATGAGTAATGGAAGTTTAGCTAATCTTTTATATGGTGAAGAAAAACAATTGAGTTGGGATGATCGGCTGCAAGTTGCTCTTGATATTTCACATGGAATAGAGTACCTTCACGAAGGGGCAGTTCCACCTGTCATACATCGTGACTTGAAGTCTGCCAACATATTACTAGATCACTCAATGAGAGCTAAGGTTGCTGACTTCGGGCTGTCAAAGGAAGAGGTATTTGATGGCCGGAATTCTGGTCTGAAAGGTACTTATGGTTACATGGACCCCGCGTATATTTCGACAAGCAAGTTAACAATGAAGAGTGACATCTACAGTTTCGGTGTCATAATATTTGAGCTCATCACTGCCATCCACCCACATCAAAACTTGATGGAGTACATTAACCTTGCTGCTATGGATCACAATGGTGTAGATGAAATTCTTGACAAGCAACTCGTTGGAAAATGCAACCTTGGAGAAGTGAGGCAGCTCGCTAAGATTGCACACAAATGCTTGCACAAATCACCTAAGAAACGCCCTTCGATAAGCGAGATTTCACAGGGCATATCGAGGATAAAGCAAAGGCGGCTGCGCCATATGATGGAAGCTTCCATGTCATTTGCCAGCAACAACTTTTCAAGAGCCGTTAGTAGATTGGAAGATCAACAACTTGAGTTGAGTAGAATAACCACCAGAACCACCATTAGCATAGGAGAAACTGGATGA 1284 0.4174 MVRQADLVILGVSVGLALGILISCAIFFGIRWYKKRVNIGPSANENSVTTLPIRTNGLGTSTDISASITSSIAPSRYDNVQKNSHFGWWSNQSKDRFASASGILKYSYREIQKATQNFTTSLGQGSFGTVYKATMATGEVVAVKVLAPNSKQGEKEFQTEVLLLGRLHHRNLVNLIGYCVDKGQRILVYQFMSNGSLANLLYGEEKQLSWDDRLQVALDISHGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEVFDGRNSGLKGTYGYMDPAYISTSKLTMKSDIYSFGVIIFELITAIHPHQNLMEYINLAAMDHNGVDEILDKQLVGKCNLGEVRQLAKIAHKCLHKSPKKRPSISEISQGISRIKQRRLRHMMEASMSFASNNFSRAVSRLEDQQLELSRITTRTTISIGETG* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3505 427 Pfam Protein tyrosine and serine/threonine kinase 118 373 IPR001245 GO:0004672|GO:0006468
Amo20g3505 427 SUPERFAMILY Protein kinase-like (PK-like) 90 372 IPR011009 -
Amo20g3505 427 Gene3D Transferase(Phosphotransferase) domain 1 192 400 - -
Amo20g3505 427 ProSiteProfiles Protein kinase domain profile. 116 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3505 427 PANTHER OS01G0750732 PROTEIN 9 417 - -
Amo20g3505 427 Gene3D Phosphorylase Kinase; domain 1 81 191 - -
Amo20g3505 427 SMART serkin_6 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g3505 427 CDD STKc_IRAK 122 378 - -
Amo20g3505 427 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Amo20g3505 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Amo20g3505 427 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 9 417 - -
Amo20g3505 427 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3505 Amo-Chr20 145193429 145198465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3505 33 380 Receptor kinase-like Gene Family AT1G79620 40.000 4.88e-73 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Amo20g3505 PK_Tyr_Ser-Thr 1.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3505 - - adu:107471361 791.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3861 14 144086992 144090668 Amo20g3505 20 145193429 145198465 PCT