Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3501 ATGGGTTCTGTTTGTTGCTGTCTGAGTTTTGATGATTTCGAAGATTATGTAAATCCAAATAGTTCTGTATATAGGAACTGCGTCTGTCTCAGTTGCTTGATACAGAACCTTTTGAACGTGTATGCATCAATATTCCGCAGAGGGGAAGTTCATTCAGCTCCTTCATCCATTCAGGGGGCTGCATCCATGACCTCTGCAGCATCACTTGATAATTCTCTATCGGACATGTACCGTTCTCCTCCAAGGCCATTACCATATGATGCGGATTCGAGGTTTTTCCGCGCACGTGATGGGCTAGTTTCAAGGCGTGAGAAGGGTTCAAGTCATTCAAATGAGGAAACAGAGCCTTTAAGAAGTAATACAGACGTTGATACAGAATCTCTGAATTCAGGAGACAAATGGAATGAGTGTGCCTGTGAAGACGGGTCAAAAGAATACCGTTCGAAGTCCTCACTAAGAGTTTCATCAGCAAAATATGCAACTGGAGTTGGCCTTGTCTATGCATCATCAGAAGAGGAGGATGTCTGTCCGACTTGCCTTGAAGAATACACTACCGAGAATCCGAAGATAATGACAAAATGCTCTCACCATTTTCATCTCGGTTGCATTTATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGAAAGGTGATGGTATTCGATGAAACGACATACTCTTGA 687 0.4323 MGSVCCCLSFDDFEDYVNPNSSVYRNCVCLSCLIQNLLNVYASIFRRGEVHSAPSSIQGAASMTSAASLDNSLSDMYRSPPRPLPYDADSRFFRARDGLVSRREKGSSHSNEETEPLRSNTDVDTESLNSGDKWNECACEDGSKEYRSKSSLRVSSAKYATGVGLVYASSEEEDVCPTCLEEYTTENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETTYS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3501 228 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 225 - -
Amo20g3501 228 Pfam RING-H2 zinc finger domain 171 216 IPR024766 GO:0008270
Amo20g3501 228 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 225 - -
Amo20g3501 228 SMART ring_2 176 216 IPR001841 -
Amo20g3501 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 223 IPR013083 -
Amo20g3501 228 MobiDBLite consensus disorder prediction 100 120 - -
Amo20g3501 228 ProSiteProfiles Zinc finger RING-type profile. 176 216 IPR001841 -
Amo20g3501 228 SUPERFAMILY RING/U-box 171 223 - -
Amo20g3501 228 MobiDBLite consensus disorder prediction 100 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3501 Amo-Chr20 145145696 145150935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3501 1 224 C3H Transcription Factor Family AT5G38895 56.000 4.89e-93 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3501 - - gmx:100790104 431.024