Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3499 ATGGGAAGAGGGAAGGTGGAGTTGAAGCAGATCGAGAACAAGATCAGCCGTCAAGTAACGTTCTCAAAACGGAGAACGGGGCTCAAGAAGAAAGCCCATGAAATCTCCCTTCTCTGTGATGCTCAACTTGCATTCATTATCTTCAACACCAGAGGCAAACTCTCTCACTTTTCATCTCATTCCAGCGTGGAAAACATCCTTGAACGATATGAGAGACATGTTAATGCATTGAAAATCAATGGAGGTGAAAGTGGATCACAGGAAAACTATGCATTGGAATGTTTGAAGCTCAGGAGCAAAGTTGAAGTCTTAGAGAGAAATATAAGGAACTTGGCGGGAAATGATCTTGATTCATTGAGCCTGAGAGAGCTTCAGAATTTAGAGCATCAGCTTGAAGCATCTTTAAAGCGTATCAGAGTAAAAAAGAACAATACTATGAAAGAATCCATCTCGTTGCTGCATAAAAAGGCAAAGGCATTGCAGGAACGCAACAGCACGTTAACAAAAGAGATTAAAGATAAGAAGACAGTGGTGGTTGAAGATCCAGACTGCTGGGTAGAACAAACCCTAATGCAATCTCCCCAAATATCACTTCCTGCTTTAACACTCGGATTATAG 618 0.4142 MGRGKVELKQIENKISRQVTFSKRRTGLKKKAHEISLLCDAQLAFIIFNTRGKLSHFSSHSSVENILERYERHVNALKINGGESGSQENYALECLKLRSKVEVLERNIRNLAGNDLDSLSLRELQNLEHQLEASLKRIRVKKNNTMKESISLLHKKAKALQERNSTLTKEIKDKKTVVVEDPDCWVEQTLMQSPQISLPALTLGL* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3499 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo20g3499 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo20g3499 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo20g3499 205 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Amo20g3499 205 Coils Coil 150 177 - -
Amo20g3499 205 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo20g3499 205 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Amo20g3499 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo20g3499 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Amo20g3499 205 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Amo20g3499 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo20g3499 205 Coils Coil 121 144 - -
Amo20g3499 205 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 204 - -
Amo20g3499 205 Coils Coil 94 114 - -
Amo20g3499 205 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo20g3499 205 PANTHER MADS BOX PROTEIN 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3499 Amo-Chr20 145105472 145117984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3499 1 178 MADS-box Gene Family AT1G26310 53.039 6.40e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo20g3499 K-box 3.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3499 K09264 - gmx:100820188 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3499 20 145105472 145117984 Amo14g3842 14 143935170 143940484 PCT